Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCG24_RS16690 Genome accession   NZ_CP133263
Coordinates   3341911..3342420 (+) Length   169 a.a.
NCBI ID   WP_308077512.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3336911..3347420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG24_RS16670 (RCG24_16670) - 3338023..3338181 (-) 159 WP_308077510.1 hypothetical protein -
  RCG24_RS16675 (RCG24_16675) - 3338178..3339833 (-) 1656 WP_308077511.1 SH3 domain-containing protein -
  RCG24_RS16680 (RCG24_16680) ychF 3340175..3341275 (+) 1101 WP_202654620.1 redox-regulated ATPase YchF -
  RCG24_RS16685 (RCG24_16685) rpsF 3341545..3341832 (+) 288 WP_202654619.1 30S ribosomal protein S6 -
  RCG24_RS16690 (RCG24_16690) ssbA 3341911..3342420 (+) 510 WP_308077512.1 single-stranded DNA-binding protein Machinery gene
  RCG24_RS16695 (RCG24_16695) rpsR 3342470..3342709 (+) 240 WP_202654617.1 30S ribosomal protein S18 -
  RCG24_RS16700 (RCG24_16700) modB 3342880..3343536 (-) 657 WP_308077513.1 molybdate ABC transporter permease subunit -
  RCG24_RS16705 (RCG24_16705) - 3343554..3343784 (-) 231 WP_308077514.1 hypothetical protein -
  RCG24_RS16710 (RCG24_16710) - 3343966..3344910 (+) 945 WP_308077515.1 YybS family protein -
  RCG24_RS16715 (RCG24_16715) - 3344936..3346909 (+) 1974 WP_308077516.1 DHH family phosphoesterase -
  RCG24_RS16720 (RCG24_16720) rplI 3346906..3347352 (+) 447 WP_202654613.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18653.50 Da        Isoelectric Point: 4.9814

>NTDB_id=872915 RCG24_RS16690 WP_308077512.1 3341911..3342420(+) (ssbA) [Neobacillus sp. OS1-32]
MMNRVVLVGRLTKDPELRYTPSGVAVATFTLACNRPFSNQQGEREADFINCVVWRKPAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVLAESVQFLEPKGSSSNRNGNDFYGAPPREPQGSSYGGGNQNQQRQNANQGFTRVDDDPFAGSGQI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=872915 RCG24_RS16690 WP_308077512.1 3341911..3342420(+) (ssbA) [Neobacillus sp. OS1-32]
ATGATGAATCGTGTCGTGCTAGTTGGCCGTTTAACGAAGGATCCAGAATTGCGTTATACCCCTAGTGGAGTAGCTGTTGC
TACCTTTACTTTGGCATGCAATCGCCCATTTTCCAATCAGCAGGGTGAGCGCGAAGCAGACTTTATTAACTGTGTTGTTT
GGCGCAAACCGGCGGAAAATGTCGCTAACTATTTGAAAAAGGGCAGCTTGGCTGGAGTTGATGGGCGCATTCAAACGCGA
AACTACGAAGCTCAGGATGGACGCCGCGTCTATGTGACGGAAGTCTTGGCTGAAAGTGTGCAATTCCTTGAACCTAAAGG
GTCATCCAGCAACAGAAACGGCAACGATTTTTACGGCGCACCACCACGGGAGCCTCAAGGGTCTTCATATGGCGGCGGCA
ATCAGAATCAACAACGTCAAAATGCTAATCAAGGGTTTACAAGAGTGGATGATGACCCATTTGCAGGAAGCGGCCAAATT
GACATTTCTGATGATGATCTCCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.429

100

0.698
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.722

0.408