Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCG22_RS15700 Genome accession   NZ_CP133262
Coordinates   3242589..3243113 (+) Length   174 a.a.
NCBI ID   WP_098260318.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3237589..3248113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS15675 (RCG22_15675) - 3237677..3238543 (+) 867 WP_308103682.1 mechanosensitive ion channel family protein -
  RCG22_RS15680 (RCG22_15680) - 3238558..3238755 (+) 198 WP_026568062.1 DUF951 domain-containing protein -
  RCG22_RS15685 (RCG22_15685) - 3238838..3240829 (+) 1992 WP_308103683.1 molybdopterin-dependent oxidoreductase -
  RCG22_RS15690 (RCG22_15690) ychF 3240957..3242057 (+) 1101 WP_308103685.1 redox-regulated ATPase YchF -
  RCG22_RS15695 (RCG22_15695) rpsF 3242229..3242516 (+) 288 WP_066249104.1 30S ribosomal protein S6 -
  RCG22_RS15700 (RCG22_15700) ssbA 3242589..3243113 (+) 525 WP_098260318.1 single-stranded DNA-binding protein Machinery gene
  RCG22_RS15705 (RCG22_15705) rpsR 3243168..3243407 (+) 240 WP_066249100.1 30S ribosomal protein S18 -
  RCG22_RS15710 (RCG22_15710) - 3243529..3244473 (+) 945 WP_308103687.1 YybS family protein -
  RCG22_RS15715 (RCG22_15715) - 3244499..3246472 (+) 1974 WP_308103689.1 DHH family phosphoesterase -
  RCG22_RS15720 (RCG22_15720) rplI 3246469..3246918 (+) 450 WP_308103691.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19118.91 Da        Isoelectric Point: 5.2939

>NTDB_id=872853 RCG22_RS15700 WP_098260318.1 3242589..3243113(+) (ssbA) [Neobacillus sp. OS1-33]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSSQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
HYEGQDGKRVYVTEVQAESVQFLEPRNASGGGGRSDNDQFGTPPREPQGSSYGGGNQNQRPNQNNNRQGGYTRVDEDPFA
GNGQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=872853 RCG22_RS15700 WP_098260318.1 3242589..3243113(+) (ssbA) [Neobacillus sp. OS1-33]
ATGATGAATCGTGTCGTGCTTGTTGGCCGCTTAACAAAAGATCCTGACTTACGGTATACACCAAATGGGGTTCCTGTTGC
TACCTTTACATTAGCAGTTAACCGTCCATTTTCTAGTCAATCAGGTGAGCGTGAAGCAGACTTTATTAATTGTGTTGTTT
GGCGTAAACCCGCTGAAAATGTGGCTAACTTCCTAAAGAAAGGAAGCCTCGCAGGTGTTGATGGCCGGATTCAAACCCGC
CACTATGAAGGACAAGATGGCAAACGTGTCTATGTTACTGAGGTACAGGCAGAAAGTGTTCAGTTCTTAGAACCTAGAAA
TGCATCCGGTGGCGGCGGAAGAAGCGATAACGACCAATTCGGTACTCCCCCACGGGAACCACAGGGTTCCTCGTATGGCG
GCGGTAATCAGAATCAACGACCGAACCAAAACAACAATAGGCAAGGTGGTTACACGCGAGTGGATGAAGATCCATTTGCA
GGAAATGGTCAAATCGACATCTCAGATGACGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.804

100

0.667
  ssb Latilactobacillus sakei subsp. sakei 23K

53.723

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385