Detailed information NTG0087283

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: K6J86_RS08620
• Genome accession: NZ_AP024627
• Coordinates: 1662338..1663117 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain BEST3136
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1657338..1668117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J86_RS08600 (BsBEST3136_16470)	trmFO	1658031..1659338 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
K6J86_RS08605 (BsBEST3136_16480)	xerC	1659406..1660320 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
K6J86_RS08610 (BsBEST3136_16490)	clpQ	1660333..1660878 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
K6J86_RS08615 (BsBEST3136_16500)	hslU	1660895..1662298 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
K6J86_RS08620 (BsBEST3136_16510)	codY	1662338..1663117 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
K6J86_RS08625 (BsBEST3136_16520)	flgB	1663497..1663886 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
K6J86_RS08630 (BsBEST3136_16530)	flgC	1663886..1664338 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
K6J86_RS08635 (BsBEST3136_16540)	fliE	1664349..1664669 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
K6J86_RS08640 (BsBEST3136_16550)	fliF	1664715..1666325 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
K6J86_RS08645 (BsBEST3136_16560)	fliG	1666338..1667354 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
K6J86_RS08650 (BsBEST3136_16570)	fliH	1667347..1668099 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=87283 K6J86_RS08620 WP_003220850.1 1662338..1663117(+) (codY) [Bacillus subtilis strain BEST3136]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=87283 K6J86_RS08620 WP_003220850.1 1662338..1663117(+) (codY) [Bacillus subtilis strain BEST3136]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467