Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RBU61_RS18985 Genome accession   NZ_CP133261
Coordinates   3795042..3795740 (-) Length   232 a.a.
NCBI ID   WP_374212533.1    Uniprot ID   -
Organism   Tissierella sp. MB52-C2     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3790042..3800740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU61_RS18975 (RBU61_18975) - 3792870..3793250 (-) 381 WP_308877246.1 DUF4183 domain-containing protein -
  RBU61_RS18980 (RBU61_18980) - 3793664..3795037 (-) 1374 WP_308877247.1 HAMP domain-containing sensor histidine kinase -
  RBU61_RS18985 (RBU61_18985) scnR 3795042..3795740 (-) 699 WP_374212533.1 response regulator transcription factor Regulator
  RBU61_RS18990 (RBU61_18990) - 3795896..3796801 (+) 906 WP_308877249.1 ATP-binding cassette domain-containing protein -
  RBU61_RS18995 (RBU61_18995) - 3796819..3797595 (+) 777 WP_308877250.1 ABC transporter permease -
  RBU61_RS19000 (RBU61_19000) - 3797606..3798346 (+) 741 WP_308877251.1 ABC transporter permease -
  RBU61_RS19005 (RBU61_19005) - 3798597..3799421 (+) 825 WP_308877252.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26851.91 Da        Isoelectric Point: 4.7381

>NTDB_id=872825 RBU61_RS18985 WP_374212533.1 3795042..3795740(-) (scnR) [Tissierella sp. MB52-C2]
MDYLKNKKILLVDDEEGLLDLLQTILYEDGYSNIKKAKTMDEALNKFYEFEPDAIILDIMLPDGDGFQLLSKIRKSSDIP
VLFLSAKDAMDDQYHGFSLGADDYLTKPFLPKDLILRLQAVLRRTYREEAEIINLKYVAIRFDRGEIIRDDEIFALTAKE
FSILQTLYQNANRIVTIDGLCQSVWGDAYYGYENSLMTHIRRIREKIEKNPSYPESLITIKGLGYKLIVEGR

Nucleotide


Download         Length: 699 bp        

>NTDB_id=872825 RBU61_RS18985 WP_374212533.1 3795042..3795740(-) (scnR) [Tissierella sp. MB52-C2]
TTGGATTATCTAAAGAATAAAAAAATCCTTCTAGTAGATGATGAAGAAGGATTATTAGATTTACTTCAAACTATTTTATA
TGAGGATGGATATTCCAATATTAAAAAGGCAAAAACAATGGACGAAGCCTTAAATAAATTTTATGAATTTGAGCCTGATG
CTATTATTTTAGATATTATGTTACCTGATGGAGACGGTTTTCAGCTATTAAGTAAAATTAGAAAATCATCAGATATTCCT
GTCCTATTTTTGTCAGCAAAAGATGCTATGGATGACCAGTATCACGGATTTTCGCTAGGTGCAGATGATTATCTTACAAA
ACCTTTTCTCCCAAAAGACTTAATACTTCGATTACAGGCTGTTCTTCGAAGAACTTACAGAGAAGAAGCAGAGATAATAA
ACTTAAAATATGTAGCCATTCGATTTGATAGAGGAGAAATCATAAGAGACGATGAAATCTTTGCTCTTACTGCAAAAGAA
TTTTCTATTTTACAGACCTTATATCAAAATGCAAACCGTATTGTTACCATAGATGGCTTATGCCAATCTGTCTGGGGCGA
TGCATATTATGGATATGAAAACTCCCTAATGACACATATTAGGAGGATTCGTGAGAAAATCGAAAAAAACCCTTCTTATC
CTGAATCCCTAATTACAATTAAGGGTTTAGGATATAAATTAATTGTGGAAGGAAGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.092

98.707

0.504
  micA Streptococcus pneumoniae Cp1015

38.983

100

0.397
  vicR Streptococcus mutans UA159

39.316

100

0.397