Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCF70_RS11575 Genome accession   NZ_CP133247
Coordinates   2336635..2337138 (-) Length   167 a.a.
NCBI ID   WP_037575408.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2331635..2342138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS11545 (RCF70_11525) - 2332084..2333304 (-) 1221 WP_107358765.1 glycerate kinase -
  RCF70_RS11550 (RCF70_11530) chrA 2333424..2334581 (-) 1158 WP_107358764.1 chromate efflux transporter -
  RCF70_RS11555 (RCF70_11535) - 2334592..2334894 (-) 303 WP_107358763.1 PadR family transcriptional regulator -
  RCF70_RS11560 (RCF70_11540) - 2335056..2335436 (+) 381 WP_419791692.1 iron chaperone -
  RCF70_RS11565 (RCF70_11545) - 2335527..2336009 (-) 483 WP_037575411.1 CPBP family intramembrane glutamic endopeptidase -
  RCF70_RS11570 (RCF70_11550) rpsR 2336350..2336592 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  RCF70_RS11575 (RCF70_11555) ssbA 2336635..2337138 (-) 504 WP_037575408.1 single-stranded DNA-binding protein Machinery gene
  RCF70_RS11580 (RCF70_11560) rpsF 2337162..2337458 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  RCF70_RS11585 (RCF70_11565) - 2337771..2338406 (+) 636 WP_107358761.1 NAD(P)-dependent oxidoreductase -
  RCF70_RS11590 (RCF70_11570) - 2338646..2338867 (+) 222 WP_107358760.1 hypothetical protein -
  RCF70_RS11595 (RCF70_11575) ychF 2338981..2340078 (-) 1098 WP_037575402.1 redox-regulated ATPase YchF -
  RCF70_RS11600 (RCF70_11580) - 2340085..2340291 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  RCF70_RS11605 (RCF70_11585) - 2340327..2341217 (-) 891 WP_107358759.1 mechanosensitive ion channel family protein -
  RCF70_RS11610 (RCF70_11590) - 2341256..2342080 (-) 825 WP_107358758.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.10 Da        Isoelectric Point: 4.9056

>NTDB_id=872800 RCF70_RS11575 WP_037575408.1 2336635..2337138(-) (ssbA) [Staphylococcus chromogenes strain TA]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=872800 RCF70_RS11575 WP_037575408.1 2336635..2337138(-) (ssbA) [Staphylococcus chromogenes strain TA]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
GACGTTCACATTAGCTGTGAATCGTACGTTTACAAATAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTAGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCGAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAATGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383