Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RCF70_RS07640 Genome accession   NZ_CP133247
Coordinates   1541295..1542179 (-) Length   294 a.a.
NCBI ID   WP_107359151.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1534948..1571595 1541295..1542179 within 0


Gene organization within MGE regions


Location: 1534948..1571595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS07620 (RCF70_07580) hslV 1536253..1536795 (-) 543 WP_419791638.1 ATP-dependent protease subunit HslV -
  RCF70_RS07625 (RCF70_07585) xerC 1536801..1537661 (-) 861 WP_375712194.1 tyrosine recombinase XerC -
  RCF70_RS07630 (RCF70_07590) trmFO 1537813..1539117 (-) 1305 WP_194745993.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RCF70_RS07635 (RCF70_07595) topA 1539130..1541199 (-) 2070 WP_107359152.1 type I DNA topoisomerase -
  RCF70_RS07640 (RCF70_07600) dprA 1541295..1542179 (-) 885 WP_107359151.1 DNA-processing protein DprA Machinery gene
  RCF70_RS07645 (RCF70_07605) sucD 1542469..1543377 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  RCF70_RS07650 (RCF70_07610) sucC 1543398..1544564 (-) 1167 WP_105986156.1 ADP-forming succinate--CoA ligase subunit beta -
  RCF70_RS07655 (RCF70_07615) - 1544789..1545058 (-) 270 WP_105986155.1 hypothetical protein -
  RCF70_RS07660 (RCF70_07620) - 1545137..1545916 (-) 780 WP_107359150.1 ribonuclease HII -
  RCF70_RS07665 (RCF70_07625) ylqF 1545897..1546787 (-) 891 WP_037573306.1 ribosome biogenesis GTPase YlqF -
  RCF70_RS07670 (RCF70_07630) - 1547019..1547381 (+) 363 WP_107359200.1 GtrA family protein -
  RCF70_RS07675 (RCF70_07635) - 1547400..1550006 (+) 2607 WP_419791639.1 YfhO family protein -
  RCF70_RS07680 (RCF70_07640) - 1550003..1552588 (+) 2586 WP_241956084.1 YfhO family protein -
  RCF70_RS07685 (RCF70_07645) - 1552643..1553194 (-) 552 WP_157947456.1 phosphatase PAP2 family protein -
  RCF70_RS07690 (RCF70_07650) rplS 1553590..1553940 (-) 351 WP_037573298.1 50S ribosomal protein L19 -
  RCF70_RS07695 (RCF70_07655) trmD 1554042..1554779 (-) 738 WP_107359147.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RCF70_RS07700 (RCF70_07660) rimM 1554776..1555279 (-) 504 WP_037573292.1 ribosome maturation factor RimM -
  RCF70_RS07705 (RCF70_07665) rpsP 1555383..1555658 (-) 276 WP_105986149.1 30S ribosomal protein S16 -
  RCF70_RS07710 (RCF70_07670) ffh 1555901..1557268 (-) 1368 WP_107363468.1 signal recognition particle protein -
  RCF70_RS07715 (RCF70_07675) - 1557282..1557614 (-) 333 WP_107359145.1 putative DNA-binding protein -
  RCF70_RS07720 (RCF70_07680) ftsY 1557601..1558956 (-) 1356 WP_107359144.1 signal recognition particle-docking protein FtsY -
  RCF70_RS07725 (RCF70_07685) smc 1558957..1562523 (-) 3567 WP_419791640.1 chromosome segregation protein SMC -
  RCF70_RS07730 (RCF70_07690) rnc 1562527..1563198 (-) 672 WP_375712193.1 ribonuclease III -
  RCF70_RS07735 (RCF70_07695) - 1563367..1563600 (-) 234 WP_019165520.1 acyl carrier protein -
  RCF70_RS07740 (RCF70_07700) fabG 1563775..1564512 (-) 738 WP_107359141.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  RCF70_RS07745 (RCF70_07705) fabD 1564505..1565431 (-) 927 WP_316053188.1 ACP S-malonyltransferase -
  RCF70_RS07750 (RCF70_07710) plsX 1565424..1566410 (-) 987 WP_107359139.1 phosphate acyltransferase PlsX -
  RCF70_RS07755 (RCF70_07715) fapR 1566403..1566972 (-) 570 WP_107359138.1 transcription factor FapR -
  RCF70_RS07760 (RCF70_07720) - 1567060..1567509 (-) 450 WP_107359137.1 ASCH domain-containing protein -
  RCF70_RS07765 (RCF70_07725) recG 1567660..1569705 (-) 2046 WP_107359136.1 ATP-dependent DNA helicase RecG -
  RCF70_RS07770 (RCF70_07730) sdaAA 1569707..1570576 (-) 870 WP_107359135.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  RCF70_RS07775 (RCF70_07735) sdaAB 1570595..1571260 (-) 666 WP_037573246.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33327.71 Da        Isoelectric Point: 9.4031

>NTDB_id=872793 RCF70_RS07640 WP_107359151.1 1541295..1542179(-) (dprA) [Staphylococcus chromogenes strain TA]
MYLKNLLKIHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPLPII
DARFPSLLKEIYHPPLLLYCKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALAHHY
ALRNDIPTIAVLGFGHFHHYPKHTQLLRTNIDKYAAGLIISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGAL
ITLDQALEQNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 885 bp        

>NTDB_id=872793 RCF70_RS07640 WP_107359151.1 1541295..1542179(-) (dprA) [Staphylococcus chromogenes strain TA]
TTGTATCTAAAAAATTTATTGAAAATACATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGT
GAAATCTTTACAATTTGAAATCACACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTTACAAAAAAT
TTTTAGCTTTCCAATCCTTAGACATTGATATCATCCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCCCAATCATT
GATGCACGATTTCCTTCATTATTAAAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATT
TAATGATGCGTGTTATTATCCTTTAGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATT
TATTACATCAAATGAAGCATCAGCCTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACCGATGCATTAGCTCATCATTAT
GCATTACGTAACGACATCCCTACAATAGCTGTATTGGGGTTTGGTCATTTTCACCATTATCCTAAACATACTCAACTTCT
AAGAACAAATATTGATAAATATGCAGCGGGTTTAATTATCAGTGAATACCCACCAACAACTGCTCCAGCAAAATTTAGAT
TTCCTGAACGTAATCGTATCATAAGCGGCTTAAGTAAAGGGGTGCTCGTCACAGAGGCAAAAGAACGAAGCGGTGCATTA
ATCACGTTAGATCAAGCGTTAGAACAAAATCGAAATGTTTATGTTTTACCCGGAGATATGTTTAATCCCAATACGAAAGG
AAATTTATTACGCGTAAAGGAAGGGGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTC
AGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.797

97.279

0.514
  dprA Staphylococcus aureus N315

52.448

97.279

0.51
  dprA Streptococcus mutans UA159

38.832

98.98

0.384