Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCF71_RS11475 Genome accession   NZ_CP133244
Coordinates   2310300..2310803 (-) Length   167 a.a.
NCBI ID   WP_037575408.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2305300..2315803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS11445 (RCF71_11410) - 2305749..2306969 (-) 1221 WP_051604979.1 glycerate kinase -
  RCF71_RS11450 (RCF71_11415) chrA 2307089..2308246 (-) 1158 WP_037575420.1 chromate efflux transporter -
  RCF71_RS11455 (RCF71_11420) - 2308257..2308559 (-) 303 WP_037575417.1 PadR family transcriptional regulator -
  RCF71_RS11460 (RCF71_11425) - 2308721..2309101 (+) 381 WP_037575414.1 iron chaperone -
  RCF71_RS11465 (RCF71_11430) - 2309192..2309674 (-) 483 WP_037575411.1 CPBP family intramembrane glutamic endopeptidase -
  RCF71_RS11470 (RCF71_11435) rpsR 2310015..2310257 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  RCF71_RS11475 (RCF71_11440) ssbA 2310300..2310803 (-) 504 WP_037575408.1 single-stranded DNA-binding protein Machinery gene
  RCF71_RS11480 (RCF71_11445) rpsF 2310827..2311123 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  RCF71_RS11485 (RCF71_11450) - 2311437..2312072 (+) 636 WP_105963088.1 NAD(P)-dependent oxidoreductase -
  RCF71_RS11490 (RCF71_11455) ychF 2312279..2313376 (-) 1098 WP_037575402.1 redox-regulated ATPase YchF -
  RCF71_RS11495 (RCF71_11460) - 2313383..2313589 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  RCF71_RS11500 (RCF71_11465) - 2313625..2314515 (-) 891 WP_037575395.1 mechanosensitive ion channel family protein -
  RCF71_RS11505 (RCF71_11470) - 2314539..2315366 (-) 828 WP_037575392.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.10 Da        Isoelectric Point: 4.9056

>NTDB_id=872766 RCF71_RS11475 WP_037575408.1 2310300..2310803(-) (ssbA) [Staphylococcus chromogenes strain IM]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=872766 RCF71_RS11475 WP_037575408.1 2310300..2310803(-) (ssbA) [Staphylococcus chromogenes strain IM]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
GACGTTCACATTAGCTGTGAATCGTACGTTTACAAATAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTAGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCGAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAATGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383