Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCF73_RS11920 Genome accession   NZ_CP133240
Coordinates   2352937..2353440 (-) Length   167 a.a.
NCBI ID   WP_037575408.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain CCM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2347937..2358440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF73_RS11875 (RCF73_11825) - 2348100..2348402 (-) 303 WP_037575417.1 PadR family transcriptional regulator -
  RCF73_RS11880 (RCF73_11830) - 2348564..2348728 (+) 165 WP_419790875.1 hypothetical protein -
  RCF73_RS11885 (RCF73_11835) - 2348680..2348943 (+) 264 WP_419790876.1 hypothetical protein -
  RCF73_RS11890 (RCF73_11840) - 2349228..2350244 (+) 1017 WP_107367114.1 methionine ABC transporter ATP-binding protein -
  RCF73_RS11895 (RCF73_11845) - 2350246..2350905 (+) 660 WP_419790877.1 methionine ABC transporter permease -
  RCF73_RS11900 (RCF73_11850) gmpC 2350918..2351760 (+) 843 WP_419790878.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  RCF73_RS11905 (RCF73_11855) - 2351830..2352333 (-) 504 WP_419790879.1 CPBP family intramembrane glutamic endopeptidase -
  RCF73_RS11910 (RCF73_11860) - 2352342..2352503 (-) 162 WP_165806050.1 hypothetical protein -
  RCF73_RS11915 (RCF73_11865) rpsR 2352651..2352893 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  RCF73_RS11920 (RCF73_11870) ssbA 2352937..2353440 (-) 504 WP_037575408.1 single-stranded DNA-binding protein Machinery gene
  RCF73_RS11925 (RCF73_11875) rpsF 2353464..2353760 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  RCF73_RS11930 (RCF73_11880) - 2354074..2354709 (+) 636 WP_103158638.1 NAD(P)-dependent oxidoreductase -
  RCF73_RS11935 (RCF73_11885) - 2355169..2355390 (+) 222 WP_107358760.1 hypothetical protein -
  RCF73_RS11940 (RCF73_11890) ychF 2355500..2356597 (-) 1098 WP_037575402.1 redox-regulated ATPase YchF -
  RCF73_RS11945 (RCF73_11895) - 2356604..2356810 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  RCF73_RS11950 (RCF73_11900) - 2356846..2357736 (-) 891 WP_105967335.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.10 Da        Isoelectric Point: 4.9056

>NTDB_id=872699 RCF73_RS11920 WP_037575408.1 2352937..2353440(-) (ssbA) [Staphylococcus chromogenes strain CCM]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=872699 RCF73_RS11920 WP_037575408.1 2352937..2353440(-) (ssbA) [Staphylococcus chromogenes strain CCM]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
GACTTTTACATTAGCTGTGAATCGTACGTTTACAAACAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTGGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCCAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAATGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383