Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WHU08_RS01710 Genome accession   NZ_CP148493
Coordinates   340935..341411 (-) Length   158 a.a.
NCBI ID   WP_162754537.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323CEC0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335935..346411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU08_RS01675 (WHU08_01675) cadC 336079..337617 (-) 1539 WP_274495839.1 lysine decarboxylation/transport transcriptional activator CadC -
  WHU08_RS01680 (WHU08_01680) - 338366..339208 (-) 843 WP_111997887.1 DUF4942 domain-containing protein -
  WHU08_RS01685 (WHU08_01685) - 339293..339490 (-) 198 WP_085949090.1 DUF957 domain-containing protein -
  WHU08_RS01690 (WHU08_01690) - 339518..339715 (-) 198 Protein_322 DUF5983 family protein -
  WHU08_RS01695 (WHU08_01695) cbtA 339712..340089 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  WHU08_RS01700 (WHU08_01700) - 340179..340547 (-) 369 WP_001285613.1 type IV toxin-antitoxin system YeeU family antitoxin -
  WHU08_RS01705 (WHU08_01705) - 340627..340848 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  WHU08_RS01710 (WHU08_01710) radC 340935..341411 (-) 477 WP_162754537.1 RadC family protein Machinery gene
  WHU08_RS01715 (WHU08_01715) - 341427..341906 (-) 480 WP_000844100.1 antirestriction protein -
  WHU08_RS01720 (WHU08_01720) - 341988..342806 (-) 819 WP_001175148.1 DUF932 domain-containing protein -
  WHU08_RS01725 (WHU08_01725) - 342896..343129 (-) 234 WP_001278287.1 DUF905 family protein -
  WHU08_RS01730 (WHU08_01730) - 343135..343812 (-) 678 WP_075855334.1 hypothetical protein -
  WHU08_RS01735 (WHU08_01735) - 343960..344640 (-) 681 WP_001282919.1 WYL domain-containing protein -
  WHU08_RS01740 (WHU08_01740) - 344843..345727 (-) 885 WP_000010402.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17624.29 Da        Isoelectric Point: 7.2517

>NTDB_id=872669 WHU08_RS01710 WP_162754537.1 340935..341411(-) (radC) [Escherichia coli strain Z1323CEC0003]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=872669 WHU08_RS01710 WP_162754537.1 340935..341411(-) (radC) [Escherichia coli strain Z1323CEC0003]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAGCCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392