Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCF74_RS12180 Genome accession   NZ_CP133235
Coordinates   2505336..2505869 (-) Length   177 a.a.
NCBI ID   WP_069813764.1    Uniprot ID   A0A1E5TJT8
Organism   Staphylococcus equorum strain CCM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2500336..2510869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF74_RS12150 (RCF74_12130) celB 2500450..2501745 (-) 1296 WP_031266071.1 PTS cellobiose transporter subunit IIC -
  RCF74_RS12155 (RCF74_12135) - 2501755..2502069 (-) 315 WP_002506081.1 PTS sugar transporter subunit IIB -
  RCF74_RS12160 (RCF74_12140) - 2502285..2502524 (-) 240 WP_002506082.1 hypothetical protein -
  RCF74_RS12165 (RCF74_12145) - 2503040..2504341 (-) 1302 WP_069813766.1 N-acetylmuramoyl-L-alanine amidase -
  RCF74_RS12170 (RCF74_12150) - 2504558..2504746 (-) 189 WP_002506085.1 hypothetical protein -
  RCF74_RS12175 (RCF74_12155) rpsR 2505042..2505284 (-) 243 WP_002506086.1 30S ribosomal protein S18 -
  RCF74_RS12180 (RCF74_12160) ssbA 2505336..2505869 (-) 534 WP_069813764.1 single-stranded DNA-binding protein Machinery gene
  RCF74_RS12185 (RCF74_12165) rpsF 2505889..2506194 (-) 306 WP_002511967.1 30S ribosomal protein S6 -
  RCF74_RS12190 (RCF74_12170) - 2506597..2507391 (+) 795 WP_069813762.1 GH25 family lysozyme -
  RCF74_RS12195 (RCF74_12175) ychF 2508279..2509376 (-) 1098 WP_002506090.1 redox-regulated ATPase YchF -
  RCF74_RS12200 (RCF74_12180) - 2509376..2509591 (-) 216 WP_002506091.1 DUF951 domain-containing protein -
  RCF74_RS12205 (RCF74_12185) - 2509613..2510497 (-) 885 WP_021339622.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19802.33 Da        Isoelectric Point: 5.2149

>NTDB_id=872669 RCF74_RS12180 WP_069813764.1 2505336..2505869(-) (ssbA) [Staphylococcus equorum strain CCM]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNQNNNNNNNNNSSNKNNQSDNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=872669 RCF74_RS12180 WP_069813764.1 2505336..2505869(-) (ssbA) [Staphylococcus equorum strain CCM]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTTAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATACAATCACGT
AGCTACGAAAACCAAGAAGGACGTCGTATATTTGTAACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAACCAACGTCATGCCCAAGAAGGAAATAACAATTTCCAAAACTTTGGCGGACAACAATCAGGTCAAAATACGTCAT
CTTATCAAAACAATAACCAAAACAACAACAATAATAATAACAACAATTCATCAAACAAAAATAATCAATCGGATAATCCA
TTTGCAAATGCAAACGGACCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5TJT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.147

100

0.621
  ssb Latilactobacillus sakei subsp. sakei 23K

52.809

100

0.531
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

62.147

0.362