Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WHU49_RS21930 Genome accession   NZ_CP148483
Coordinates   4328535..4328975 (-) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain Z1323CEC0004     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4323535..4333975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU49_RS21905 (WHU49_21830) coaE 4324025..4324645 (-) 621 WP_001269527.1 dephospho-CoA kinase -
  WHU49_RS21910 (WHU49_21835) - 4324670..4324714 (+) 45 WP_120795372.1 protein YacM -
  WHU49_RS21915 (WHU49_21840) guaC 4324870..4325913 (+) 1044 WP_001217337.1 GMP reductase -
  WHU49_RS21920 (WHU49_21845) hofC 4325948..4327150 (-) 1203 WP_000157266.1 protein transport protein HofC -
  WHU49_RS21925 (WHU49_21850) pilB 4327140..4328525 (-) 1386 WP_063856362.1 type II secretion system protein GspE Machinery gene
  WHU49_RS21930 (WHU49_21855) pilA 4328535..4328975 (-) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  WHU49_RS21935 (WHU49_21860) nadC 4329178..4330071 (-) 894 WP_001135176.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WHU49_RS21940 (WHU49_21865) ampD 4330159..4330710 (+) 552 WP_000923722.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WHU49_RS21945 (WHU49_21870) ampE 4330707..4331561 (+) 855 WP_000172014.1 beta-lactamase regulator AmpE -
  WHU49_RS21950 (WHU49_21875) aroP 4331604..4332977 (-) 1374 WP_000969912.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=872638 WHU49_RS21930 WP_000360904.1 4328535..4328975(-) (pilA) [Escherichia coli strain Z1323CEC0004]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=872638 WHU49_RS21930 WP_000360904.1 4328535..4328975(-) (pilA) [Escherichia coli strain Z1323CEC0004]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363