Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | RB649_RS02260 | Genome accession | NZ_CP133179 |
| Coordinates | 427766..428986 (+) | Length | 406 a.a. |
| NCBI ID | WP_011228203.1 | Uniprot ID | Q5SK58 |
| Organism | Thermus thermophilus HB27 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 422766..433986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RB649_RS02230 (RB649_02230) | holA | 422877..423755 (-) | 879 | WP_011172881.1 | DNA polymerase III subunit delta | - |
| RB649_RS02235 (RB649_02235) | - | 423790..424947 (-) | 1158 | WP_011172882.1 | acyl-CoA dehydrogenase family protein | - |
| RB649_RS02240 (RB649_02240) | - | 424957..425583 (-) | 627 | WP_011228202.1 | GNAT family N-acetyltransferase | - |
| RB649_RS02245 (RB649_02245) | - | 425617..426699 (+) | 1083 | WP_011172884.1 | PIG-L deacetylase family protein | - |
| RB649_RS02250 (RB649_02250) | scpB | 426643..427176 (-) | 534 | WP_008632201.1 | SMC-Scp complex subunit ScpB | - |
| RB649_RS02255 (RB649_02255) | - | 427180..427767 (-) | 588 | WP_011172885.1 | L-threonylcarbamoyladenylate synthase | - |
| RB649_RS02260 (RB649_02260) | pilC | 427766..428986 (+) | 1221 | WP_011228203.1 | type II secretion system F family protein | Machinery gene |
| RB649_RS02265 (RB649_02265) | - | 428961..429413 (-) | 453 | WP_011172887.1 | EVE domain-containing protein | - |
| RB649_RS02270 (RB649_02270) | - | 429482..429949 (+) | 468 | WP_011172888.1 | hypothetical protein | - |
| RB649_RS02275 (RB649_02275) | - | 429964..431319 (+) | 1356 | WP_011172889.1 | FAD-binding oxidoreductase | - |
| RB649_RS02280 (RB649_02280) | - | 431548..432495 (+) | 948 | WP_011172890.1 | IS701-like element ISTth8 family transposase | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44687.70 Da Isoelectric Point: 9.7205
>NTDB_id=872278 RB649_RS02260 WP_011228203.1 427766..428986(+) (pilC) [Thermus thermophilus HB27]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGKGLQAEVRIPALERGPGLKDLAIFSRQLATMLGA
GLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELE
LRGKIRSAMTYPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVSDLLRAATLPLLLLAVALFFAYRWY
YGTPQGRRVIDRLKLRLPVFGNLNRKTAVARFSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSVQ
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGKGLQAEVRIPALERGPGLKDLAIFSRQLATMLGA
GLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELE
LRGKIRSAMTYPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVSDLLRAATLPLLLLAVALFFAYRWY
YGTPQGRRVIDRLKLRLPVFGNLNRKTAVARFSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSVQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=872278 RB649_RS02260 WP_011228203.1 427766..428986(+) (pilC) [Thermus thermophilus HB27]
ATGCCGGTCTACCAGTATAAGGCCCGGGACCGCCAGGGCCGTCTGGTGGAGGCCACCATTGAGGCCGAGGACCTCCGCAC
CGCCGCGAGGCTCCTCCGCGACCGGGGCCTCTTCGTGGCCGAGATCAAGGAGCCGGGGAAGGGCCTGCAGGCGGAGGTCC
GGATCCCCGCTTTAGAGCGGGGGCCGGGCCTGAAGGACCTCGCCATCTTCTCCCGGCAGCTCGCCACCATGCTGGGGGCG
GGCCTCACCCTCCTCCAGGCCCTCGCCATCCTGGAGCGCCAGACGGAAAACCGGAAGTTCCGGGAGATCCTCAAGCAGGT
GCGCACCGACGTGGAGGGGGGGATGGCCTTCTCCGAGGCCCTCTCCAAGCACAAGATCTTCTCCCGCCTCTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGCGGCCTGGACCTCATCCTGGACCGGCTGGCGAGCTTTCTGGAGAAGGAGCTGGAG
CTAAGGGGCAAGATCCGGAGCGCCATGACCTACCCGGTCATCGTCTTCGTTTTCGCCGTGGGCGTGGCCTACTTCCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACGGATTTAGGCTCCGAGCTTCCCCTCCTCACCCGCTTCCTCATCG
CCGTCTCCGACCTTCTTAGGGCGGCCACCCTGCCCCTCCTCCTCCTCGCCGTGGCCCTCTTCTTCGCCTACCGCTGGTAC
TACGGCACCCCCCAGGGGCGTAGGGTCATTGACCGCCTTAAGCTCCGCCTCCCCGTCTTCGGCAACCTCAACCGCAAGAC
CGCCGTGGCCCGCTTCTCCCGCACCCTGGCCCTCCTTCTCTCCAGCGGGGTGAACATCGTGGAGGCCCTGGACATCACCA
AGGGGACCGCGGGCAACAGCGTGGTGGAGGAGATCGTGGAGGCCGCCAAGCTGAAGATCCAGCAGGGCGACCCCCTGAAC
CTCACCCTGGCCCAGCACCCCTTCGTCTTCCCGCCCATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACGGGGGCCCT
GGACACCATGCTCTCCAAGGTGGCCGACTTCTATGAGCGGGAGGTGGACGAGGCGGTGGCGAGCCTCACCGCGGCCATTG
AGCCCCTCATGATCATCTTCCTGGGCGTCATCGTGGGCATGATCGTGGCCGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTCTCCGTGCAATAA
ATGCCGGTCTACCAGTATAAGGCCCGGGACCGCCAGGGCCGTCTGGTGGAGGCCACCATTGAGGCCGAGGACCTCCGCAC
CGCCGCGAGGCTCCTCCGCGACCGGGGCCTCTTCGTGGCCGAGATCAAGGAGCCGGGGAAGGGCCTGCAGGCGGAGGTCC
GGATCCCCGCTTTAGAGCGGGGGCCGGGCCTGAAGGACCTCGCCATCTTCTCCCGGCAGCTCGCCACCATGCTGGGGGCG
GGCCTCACCCTCCTCCAGGCCCTCGCCATCCTGGAGCGCCAGACGGAAAACCGGAAGTTCCGGGAGATCCTCAAGCAGGT
GCGCACCGACGTGGAGGGGGGGATGGCCTTCTCCGAGGCCCTCTCCAAGCACAAGATCTTCTCCCGCCTCTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGCGGCCTGGACCTCATCCTGGACCGGCTGGCGAGCTTTCTGGAGAAGGAGCTGGAG
CTAAGGGGCAAGATCCGGAGCGCCATGACCTACCCGGTCATCGTCTTCGTTTTCGCCGTGGGCGTGGCCTACTTCCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACGGATTTAGGCTCCGAGCTTCCCCTCCTCACCCGCTTCCTCATCG
CCGTCTCCGACCTTCTTAGGGCGGCCACCCTGCCCCTCCTCCTCCTCGCCGTGGCCCTCTTCTTCGCCTACCGCTGGTAC
TACGGCACCCCCCAGGGGCGTAGGGTCATTGACCGCCTTAAGCTCCGCCTCCCCGTCTTCGGCAACCTCAACCGCAAGAC
CGCCGTGGCCCGCTTCTCCCGCACCCTGGCCCTCCTTCTCTCCAGCGGGGTGAACATCGTGGAGGCCCTGGACATCACCA
AGGGGACCGCGGGCAACAGCGTGGTGGAGGAGATCGTGGAGGCCGCCAAGCTGAAGATCCAGCAGGGCGACCCCCTGAAC
CTCACCCTGGCCCAGCACCCCTTCGTCTTCCCGCCCATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACGGGGGCCCT
GGACACCATGCTCTCCAAGGTGGCCGACTTCTATGAGCGGGAGGTGGACGAGGCGGTGGCGAGCCTCACCGCGGCCATTG
AGCCCCTCATGATCATCTTCCTGGGCGTCATCGTGGGCATGATCGTGGCCGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTCTCCGTGCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
100 |
100 |
1 |
| pilC | Acinetobacter baylyi ADP1 |
38.462 |
99.261 |
0.382 |
| pilC | Pseudomonas stutzeri DSM 10701 |
36.908 |
98.768 |
0.365 |
| pilC | Acinetobacter baumannii D1279779 |
36.658 |
98.768 |
0.362 |