Detailed information NTG0872222

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QL104_RS09325
• Genome accession: NZ_CP133164
• Coordinates: 1959180..1961411 (+)
• Length: 743 a.a.
• NCBI ID: WP_085597206.1
• Uniprot ID: -
• Organism: Pseudomonas piscis strain 75
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1954180..1966411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QL104_RS09300 (QL104_09300)	-	1955306..1955965 (+)	660	WP_085597207.1	transglutaminase family protein	-
QL104_RS09305 (QL104_09305)	-	1956008..1956631 (+)	624	WP_031321232.1	glutathione S-transferase family protein	-
QL104_RS09310 (QL104_09310)	-	1956764..1957696 (+)	933	WP_022643151.1	ABC transporter ATP-binding protein	-
QL104_RS09315 (QL104_09315)	-	1957693..1958472 (+)	780	WP_022643152.1	ABC transporter permease	-
QL104_RS09320 (QL104_09320)	-	1958524..1959039 (-)	516	WP_031321234.1	DUF2062 domain-containing protein	-
QL104_RS09325 (QL104_09325)	comA	1959180..1961411 (+)	2232	WP_085597206.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QL104_RS09330 (QL104_09330)	exbB	1961514..1962149 (+)	636	WP_022643155.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QL104_RS09335 (QL104_09335)	-	1962146..1962574 (+)	429	WP_022643156.1	biopolymer transporter ExbD	-
QL104_RS09340 (QL104_09340)	lpxK	1962574..1963584 (+)	1011	WP_085597204.1	tetraacyldisaccharide 4'-kinase	-
QL104_RS09345 (QL104_09345)	-	1963610..1963795 (+)	186	WP_011060103.1	Trm112 family protein	-
QL104_RS09350 (QL104_09350)	kdsB	1963792..1964556 (+)	765	WP_053135780.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QL104_RS09355 (QL104_09355)	-	1964556..1965020 (+)	465	WP_022643158.1	low molecular weight protein-tyrosine-phosphatase	-
QL104_RS09360 (QL104_09360)	murB	1965017..1966042 (+)	1026	WP_282878530.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81677.11 Da
• Isoelectric Point: 11.3903

>NTDB_id=872222 QL104_RS09325 WP_085597206.1 1959180..1961411(+) (comA) [Pseudomonas piscis strain 75]
MRTGMLGLAAGLLALGFLPALPPLWWLLPVLVLALLLLPFRTHPVAFFLFGFSWACACAQWALDDRLASRLDGQTRWLEG
RISGLPEAGAQVVRFELQDAQARRERLPRRIRVSWRDGPPVKSGERWRLAVTLRRPVGLLNLQGFDYEAWLLARRIGAVG
TVKDGQLLAPAQGAWRDRLRQRLLAVQAHGRSGGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAGVIYLV
VAGLARLGAWPARWPWLPWACVLGFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGTWWPLLLALDAVLLLEPL
ASLQPGFWLSFAAVAILIFTFAGRLGAWRWWQSWTRAQWLIAIGLLPPMLALGLPISLSGPLANLLAVPWVSLLVLPPAL
LGSLLLPLPVVGEGLLWLAGGLLEGLFRVLGLIAGWRPAWVAPLLPAWIWSLASLGALLLLLPPGVPLRILGWPLLLLVA
WPPQPRVPFGEAEVWQLDVGQGLSFVLRTRNHAMLYDAGARSGDFDLGERVVVPTLQRLGIHQLDLMLLSHADNDHAGGA
LAVQRALPVRLVRSGEPEALPAILQAMPCESGASWQWDGVRFRQWQWAGARDGNQASCVLQVEARGERLLLTGDIDIHAE
RALLQGPLAQRTHWLQAPHHGSRTSSSMALLQRLAPDAVLVSRGRGNAFGHPHPQVVARYRSLGVALYDSAEQGALRLRL
GAFAPPYSVREQRRFWREPVTMP

Nucleotide

• Length: 2232 bp

>NTDB_id=872222 QL104_RS09325 WP_085597206.1 1959180..1961411(+) (comA) [Pseudomonas piscis strain 75]
ATGCGAACAGGGATGCTGGGCTTGGCCGCGGGGCTTCTGGCGCTGGGTTTTCTGCCGGCCTTGCCGCCACTCTGGTGGTT
GTTGCCGGTATTGGTGCTGGCCTTGCTGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTATTCGGTTTCAGTT
GGGCCTGTGCCTGTGCGCAGTGGGCGCTCGACGATCGGTTGGCGTCGCGCCTGGACGGCCAGACTCGCTGGCTGGAAGGA
CGGATCAGCGGTTTGCCGGAGGCTGGGGCACAGGTGGTGCGGTTCGAGTTGCAAGATGCCCAGGCCCGACGCGAGCGCCT
GCCACGGCGAATTCGCGTGAGCTGGCGTGACGGGCCGCCGGTCAAGAGCGGCGAGCGCTGGCGCCTGGCGGTGACACTGC
GCCGCCCCGTGGGGTTGCTCAACCTACAGGGGTTCGACTACGAGGCGTGGCTGCTGGCGCGGCGTATCGGCGCCGTCGGT
ACGGTCAAGGATGGCCAGTTGCTGGCGCCGGCCCAGGGCGCCTGGCGCGACCGCTTGCGCCAGCGCTTGCTGGCGGTCCA
GGCCCATGGCCGGAGCGGAGGGCTGGCCGCATTGGTGATGGGGGATGGTTCCGGGCTGACGCGAGAGGACTGGCAGCTGT
TGCAAGACACCGGCACCGTGCACCTGATGGTCATTTCCGGACAGCACATCAGCCTCTTGGCGGGGGTGATCTATCTCGTC
GTGGCGGGGCTGGCGCGGCTCGGCGCCTGGCCCGCGCGCTGGCCATGGCTGCCGTGGGCCTGTGTCCTGGGCTTTCTCGG
GGCGTTGGGCTACGGGTTGCTCGCGGGGTTCGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCCCTGGTCCTGCTCT
GGCGCTTGCGCTTTCGTCACCTGGGCACTTGGTGGCCGCTGCTGCTGGCGCTGGATGCGGTGCTGTTGCTCGAACCCCTG
GCCAGCCTGCAACCGGGCTTCTGGCTGTCGTTCGCGGCGGTGGCGATCCTGATCTTCACCTTCGCCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGAGCTGGACCCGCGCCCAATGGCTGATAGCGATCGGCCTGCTGCCGCCGATGCTGGCCCTGGGCC
TGCCCATCAGTCTCAGCGGTCCGCTGGCCAACCTGCTGGCGGTGCCTTGGGTCAGCCTGCTGGTGCTGCCGCCGGCTTTG
CTGGGAAGCCTGTTGTTGCCCTTGCCAGTGGTGGGCGAAGGCTTGTTGTGGCTGGCCGGTGGGCTGCTGGAGGGACTGTT
CCGTGTGTTGGGGCTGATCGCCGGATGGCGGCCGGCCTGGGTCGCGCCGCTGTTGCCCGCCTGGATCTGGAGCCTCGCCA
GCCTGGGGGCGTTGTTGCTGTTGCTGCCGCCCGGCGTGCCGCTGCGGATTCTCGGCTGGCCGCTGTTGCTGCTGGTGGCC
TGGCCGCCGCAGCCGCGAGTGCCCTTCGGCGAGGCCGAGGTCTGGCAGCTGGATGTGGGCCAGGGGCTGTCGTTCGTCCT
GCGTACCCGTAACCACGCGATGCTGTACGACGCGGGCGCCCGTAGCGGCGATTTCGACCTCGGCGAGCGGGTAGTGGTGC
CGACCCTGCAGCGCTTGGGCATCCACCAGCTGGACCTGATGTTGCTCAGCCATGCCGATAACGATCATGCCGGTGGCGCC
CTGGCGGTGCAGCGGGCGTTGCCGGTTCGCCTGGTGCGTAGTGGCGAGCCCGAGGCATTGCCGGCCATCTTGCAGGCCAT
GCCGTGCGAGTCCGGGGCGAGCTGGCAATGGGATGGCGTGCGTTTCCGCCAGTGGCAATGGGCCGGCGCGCGCGATGGCA
ACCAGGCTTCCTGTGTGTTGCAGGTCGAGGCCCGGGGTGAGCGCCTGCTGCTCACTGGCGACATCGATATCCATGCGGAA
CGGGCTTTGCTCCAGGGCCCGCTGGCGCAGCGGACCCATTGGTTGCAGGCGCCGCACCATGGCAGCCGGACCTCTTCGTC
CATGGCCCTGCTACAACGGTTGGCGCCCGACGCGGTACTGGTTTCCCGGGGCCGGGGCAATGCCTTCGGTCACCCGCACC
CGCAGGTGGTGGCGCGTTATCGGAGCCTGGGCGTGGCGCTTTATGACAGTGCCGAGCAGGGCGCGTTGAGGTTGCGCCTG
GGGGCTTTTGCGCCGCCCTACAGCGTGCGCGAGCAACGGCGGTTCTGGCGTGAGCCGGTCACAATGCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.117	96.77	0.62
comA	Ralstonia pseudosolanacearum GMI1000	32.736	100	0.369