Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QL104_RS09330 Genome accession   NZ_CP133164
Coordinates   1961514..1962149 (+) Length   211 a.a.
NCBI ID   WP_022643155.1    Uniprot ID   -
Organism   Pseudomonas piscis strain 75     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956514..1967149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL104_RS09310 (QL104_09310) - 1956764..1957696 (+) 933 WP_022643151.1 ABC transporter ATP-binding protein -
  QL104_RS09315 (QL104_09315) - 1957693..1958472 (+) 780 WP_022643152.1 ABC transporter permease -
  QL104_RS09320 (QL104_09320) - 1958524..1959039 (-) 516 WP_031321234.1 DUF2062 domain-containing protein -
  QL104_RS09325 (QL104_09325) comA 1959180..1961411 (+) 2232 WP_085597206.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QL104_RS09330 (QL104_09330) exbB 1961514..1962149 (+) 636 WP_022643155.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QL104_RS09335 (QL104_09335) - 1962146..1962574 (+) 429 WP_022643156.1 biopolymer transporter ExbD -
  QL104_RS09340 (QL104_09340) lpxK 1962574..1963584 (+) 1011 WP_085597204.1 tetraacyldisaccharide 4'-kinase -
  QL104_RS09345 (QL104_09345) - 1963610..1963795 (+) 186 WP_011060103.1 Trm112 family protein -
  QL104_RS09350 (QL104_09350) kdsB 1963792..1964556 (+) 765 WP_053135780.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QL104_RS09355 (QL104_09355) - 1964556..1965020 (+) 465 WP_022643158.1 low molecular weight protein-tyrosine-phosphatase -
  QL104_RS09360 (QL104_09360) murB 1965017..1966042 (+) 1026 WP_282878530.1 UDP-N-acetylmuramate dehydrogenase -
  QL104_RS09365 (QL104_09365) - 1966285..1966755 (+) 471 WP_022643160.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22948.06 Da        Isoelectric Point: 6.9826

>NTDB_id=872223 QL104_RS09330 WP_022643155.1 1961514..1962149(+) (exbB) [Pseudomonas piscis strain 75]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGAA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=872223 QL104_RS09330 WP_022643155.1 1961514..1962149(+) (exbB) [Pseudomonas piscis strain 75]
GTGTGGGAATTGGTCAAATCCGGCGGTTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCGGCCGTGGGCATCATCGC
CGAGCGCTTGTGGACCCTGCGGGCCAGCCGTGTAACCCCGCCCCACCTCCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAACTGCGTGCCGATTCGCCCCTGGGCGAGATCCTGGCCGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAAGCGGCGGCCCGGGTCATCCATGAGCTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCCATGTGCTGGCCGGAGGTATCTCCAAGGCCCTGATCACCACCGCT
GCGGGCCTGATGGTGGGGATCCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCCGAGGGCGCAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872