Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   Q9Q86_RS02505 Genome accession   NZ_CP133162
Coordinates   487933..490347 (+) Length   804 a.a.
NCBI ID   WP_112986237.1    Uniprot ID   -
Organism   Acinetobacter sp. A22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 446335..495174 487933..490347 within 0


Gene organization within MGE regions


Location: 446335..495174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9Q86_RS02180 - 446335..446478 (-) 144 WP_004913649.1 hypothetical protein -
  Q9Q86_RS02185 - 446751..447959 (+) 1209 WP_112986289.1 integrase family protein -
  Q9Q86_RS02190 - 447965..448171 (-) 207 WP_112986288.1 AlpA family transcriptional regulator -
  Q9Q86_RS02195 - 448172..448369 (-) 198 WP_112986287.1 helix-turn-helix domain-containing protein -
  Q9Q86_RS02200 - 448366..448758 (-) 393 WP_112986286.1 hypothetical protein -
  Q9Q86_RS02205 - 448751..449098 (-) 348 WP_112986285.1 hypothetical protein -
  Q9Q86_RS02210 - 449108..449371 (-) 264 WP_112986284.1 hypothetical protein -
  Q9Q86_RS02215 - 449371..449595 (-) 225 WP_112986283.1 hypothetical protein -
  Q9Q86_RS02220 - 449654..450262 (-) 609 WP_112986282.1 lambda exonuclease family protein -
  Q9Q86_RS02225 bet 450243..451091 (-) 849 WP_112986281.1 phage recombination protein Bet -
  Q9Q86_RS02230 - 451102..452148 (-) 1047 WP_112986280.1 hypothetical protein -
  Q9Q86_RS02235 - 452218..452412 (-) 195 WP_112986279.1 hypothetical protein -
  Q9Q86_RS02240 - 452416..452631 (-) 216 WP_112986278.1 hypothetical protein -
  Q9Q86_RS02245 - 452628..452909 (-) 282 WP_112986277.1 hypothetical protein -
  Q9Q86_RS02250 - 453115..453402 (-) 288 WP_171293742.1 hypothetical protein -
  Q9Q86_RS02255 - 453406..454152 (-) 747 WP_112986276.1 LexA family transcriptional regulator -
  Q9Q86_RS02260 - 454276..454506 (+) 231 WP_112986275.1 hypothetical protein -
  Q9Q86_RS02265 - 454517..454783 (+) 267 WP_061519342.1 hypothetical protein -
  Q9Q86_RS02270 - 454838..454993 (+) 156 WP_171293741.1 hypothetical protein -
  Q9Q86_RS02275 - 454993..455829 (+) 837 WP_112986274.1 hypothetical protein -
  Q9Q86_RS02280 - 455829..457151 (+) 1323 WP_112986273.1 DnaB-like helicase C-terminal domain-containing protein -
  Q9Q86_RS02285 - 457163..457909 (+) 747 WP_112986301.1 site-specific DNA-methyltransferase -
  Q9Q86_RS02290 - 457906..458100 (+) 195 WP_112986272.1 hypothetical protein -
  Q9Q86_RS02295 - 458097..458876 (+) 780 WP_112986271.1 hypothetical protein -
  Q9Q86_RS02300 - 458873..459118 (+) 246 WP_112986270.1 helix-turn-helix domain-containing protein -
  Q9Q86_RS02305 - 459115..459546 (+) 432 WP_112986269.1 hypothetical protein -
  Q9Q86_RS02310 - 459543..460013 (+) 471 WP_112986268.1 hypothetical protein -
  Q9Q86_RS02315 - 460010..460174 (+) 165 WP_171293740.1 hypothetical protein -
  Q9Q86_RS02320 - 460171..460452 (+) 282 WP_227540260.1 hypothetical protein -
  Q9Q86_RS02325 - 460452..460829 (+) 378 WP_112986267.1 hypothetical protein -
  Q9Q86_RS02330 - 460826..461005 (+) 180 WP_075315851.1 hypothetical protein -
  Q9Q86_RS02335 - 461015..461440 (+) 426 WP_112986266.1 VRR-NUC domain-containing protein -
  Q9Q86_RS02340 - 461450..461887 (+) 438 WP_112986265.1 hypothetical protein -
  Q9Q86_RS02345 - 462004..462126 (+) 123 WP_260564124.1 hypothetical protein -
  Q9Q86_RS02350 - 462300..462578 (+) 279 WP_112986264.1 hypothetical protein -
  Q9Q86_RS02355 - 462562..463068 (+) 507 WP_112986263.1 hypothetical protein -
  Q9Q86_RS02360 - 463078..463674 (+) 597 WP_112986262.1 terminase small subunit -
  Q9Q86_RS02365 - 463652..465100 (+) 1449 WP_112986261.1 terminase large subunit domain-containing protein -
  Q9Q86_RS02370 - 465118..467199 (+) 2082 WP_112986260.1 portal protein -
  Q9Q86_RS02375 - 467189..468079 (+) 891 WP_112986259.1 hypothetical protein -
  Q9Q86_RS02380 - 468091..469350 (+) 1260 WP_112986258.1 P22 phage major capsid protein family protein -
  Q9Q86_RS02385 - 469413..469682 (+) 270 WP_112986257.1 hypothetical protein -
  Q9Q86_RS02390 - 469679..470074 (+) 396 WP_112986256.1 hypothetical protein -
  Q9Q86_RS02395 - 470091..470573 (+) 483 WP_112986255.1 packaged DNA stabilization gp4 family protein -
  Q9Q86_RS02400 - 470566..471015 (+) 450 WP_112986254.1 hypothetical protein -
  Q9Q86_RS02405 - 471018..472403 (+) 1386 WP_112986253.1 packaged DNA stabilization protein -
  Q9Q86_RS02410 - 472404..472760 (+) 357 WP_112986252.1 hypothetical protein -
  Q9Q86_RS02415 - 472760..473095 (+) 336 WP_112986251.1 hypothetical protein -
  Q9Q86_RS02420 - 473092..473562 (+) 471 WP_112986250.1 GNAT family N-acetyltransferase -
  Q9Q86_RS02425 - 473538..474206 (+) 669 WP_227540259.1 hypothetical protein -
  Q9Q86_RS02430 - 474209..475576 (+) 1368 WP_205669699.1 hypothetical protein -
  Q9Q86_RS02435 - 475613..475969 (+) 357 WP_112986249.1 hypothetical protein -
  Q9Q86_RS02440 - 475976..476209 (+) 234 WP_112986248.1 kynureninase -
  Q9Q86_RS02445 - 476274..479012 (+) 2739 WP_112986247.1 glycoside hydrolase family 104 protein -
  Q9Q86_RS02450 - 479086..480711 (+) 1626 WP_112986246.1 SGNH/GDSL hydrolase family protein -
  Q9Q86_RS02455 - 480723..481472 (+) 750 WP_112986245.1 hypothetical protein -
  Q9Q86_RS02460 - 481607..481828 (+) 222 WP_374050027.1 holin -
  Q9Q86_RS02465 - 481828..482343 (+) 516 WP_112986243.1 glycoside hydrolase family 108 protein -
  Q9Q86_RS02475 - 482791..483732 (-) 942 WP_112986241.1 hypothetical protein -
  Q9Q86_RS02480 - 483959..484429 (+) 471 WP_004913645.1 YaiI/YqxD family protein -
  Q9Q86_RS02485 - 484437..485324 (+) 888 WP_112986240.1 DMT family transporter -
  Q9Q86_RS02490 - 485335..485907 (-) 573 WP_112986239.1 PilZ domain-containing protein -
  Q9Q86_RS02495 - 485933..487168 (+) 1236 WP_004959849.1 lipoprotein-releasing ABC transporter permease subunit -
  Q9Q86_RS02500 lolD 487161..487847 (+) 687 WP_112986238.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  Q9Q86_RS02505 comA/comEC 487933..490347 (+) 2415 WP_112986237.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q9Q86_RS02510 - 490355..491299 (-) 945 WP_112986236.1 lysophospholipid acyltransferase family protein -
  Q9Q86_RS02515 sppA 491438..492460 (+) 1023 WP_004913625.1 signal peptide peptidase SppA -
  Q9Q86_RS02520 - 492635..493426 (+) 792 WP_004959836.1 alpha/beta fold hydrolase -
  Q9Q86_RS02525 purN 493478..494107 (-) 630 WP_171053811.1 phosphoribosylglycinamide formyltransferase -
  Q9Q86_RS02530 purM 494104..495174 (-) 1071 WP_112986235.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 804 a.a.        Molecular weight: 92719.26 Da        Isoelectric Point: 8.2118

>NTDB_id=872184 Q9Q86_RS02505 WP_112986237.1 487933..490347(+) (comA/comEC) [Acinetobacter sp. A22]
MLKIILIGWIVGTSAMGRDFEIINSTWWIWCCIATLLFIFYKIKNKGHSPFYKSLLLITAIWAIFCTGYHYADQALEKRL
ELRELKSQPFEAVVYIRKINELTEEGVKQQAVVLNRHDQVVNWLMYIKEKDHQPEVFVLGSYYRVYGTIKPAHSYAVQGV
FDQEKWFLQQNLMSAFLVEQIVPLSQDEVYRLGHLQYLKEQDHFLEKIGLKIEIMRFEFRQMLAHSNLQHKGLLLALLTG
DESLLAKDLKKKFQQLGISHLLAISGPHVLIFAIMLTWGLQRVLQHYFPNLYLWQPRQIILVFPFLLSVMVYVAFVGFEI
PALRTLLTVALASFFVITRQAIQPFQLLIYSACLFLIYDPFSILSAAFWLSYGACFILLRIYQTISTLPKDRIKNRTEDI
KFAIKILIESQWKIFIALMPLVIIFFQQIAWIAPLSNLIAIPILSMLVVPLDIFAACVWLIFPSLGLVLFTLNNMLLSIL
IGLLDILMSLTPDLQGISYIPLSLFALSVGIFILFMPKGTIPKSWGLVCFLPILFGAKQQKTMLTILDVGQGQSVFLQQA
QHNLMIDTGGLYNEEMFSLGERVIVPFLRQQGIEKLDQMILSHLDQDHSGAFPYIEQVLEITKVYANEKNEKLPFKDNFS
FCHQGQKWNLAQAQVEILSPKMEELSYVQNQQNEYSCVVYIEFEHAKPYRKFLIMGDAGWETEYKLLKQYPDLEVDVIVL
GHHGSKHSSAYDFLATIKPKLAIASAGFENRYGHPSIELQQRLRTLNIPLLTTSQNGSISFEINHANTVISMYRQQRKWL
TRVQ

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=872184 Q9Q86_RS02505 WP_112986237.1 487933..490347(+) (comA/comEC) [Acinetobacter sp. A22]
ATGTTGAAAATTATATTGATTGGCTGGATTGTGGGTACTTCAGCTATGGGGCGTGATTTTGAAATCATTAATTCCACTTG
GTGGATTTGGTGCTGTATTGCGACTCTACTATTTATTTTTTATAAAATAAAAAATAAAGGACATTCCCCATTCTACAAGT
CACTGTTATTGATCACTGCGATTTGGGCAATCTTTTGCACGGGGTATCACTATGCAGATCAAGCTCTAGAAAAAAGGCTC
GAATTACGAGAGTTAAAATCGCAACCATTTGAGGCTGTTGTTTATATTCGAAAAATAAATGAACTCACTGAAGAGGGTGT
TAAACAGCAAGCTGTAGTTTTAAATCGACATGATCAAGTAGTGAATTGGTTGATGTACATAAAGGAGAAGGATCATCAGC
CAGAAGTTTTTGTATTGGGGAGCTATTATCGAGTTTACGGAACAATCAAACCCGCACACAGTTATGCCGTTCAAGGTGTT
TTTGATCAAGAAAAATGGTTCTTACAACAAAATTTAATGTCAGCATTTTTAGTCGAACAAATCGTACCTTTAAGCCAAGA
TGAGGTGTATAGGCTTGGTCATTTGCAATATTTGAAGGAGCAAGACCATTTTTTGGAGAAAATCGGTCTAAAGATTGAAA
TAATGCGATTTGAATTTAGGCAAATGCTTGCTCATTCAAATTTACAACACAAAGGATTGTTGCTTGCGTTGCTTACAGGT
GATGAAAGTTTATTAGCTAAAGATTTAAAGAAAAAATTTCAGCAACTTGGGATTTCACATTTATTGGCGATCTCAGGTCC
TCATGTGCTGATTTTTGCAATCATGCTGACATGGGGATTGCAAAGAGTTTTACAGCATTATTTTCCAAACTTATATCTAT
GGCAACCTCGTCAGATTATTTTGGTTTTTCCATTTTTATTGAGTGTCATGGTTTATGTGGCTTTCGTTGGATTTGAAATT
CCAGCTTTAAGGACGTTGTTGACGGTCGCCTTGGCAAGTTTTTTCGTTATCACAAGGCAAGCGATTCAGCCTTTTCAGTT
ACTAATTTATAGCGCGTGTTTATTTCTCATCTATGATCCATTTAGTATCTTGTCGGCTGCCTTTTGGCTATCTTACGGTG
CATGTTTCATCCTATTGAGAATTTATCAAACGATTAGCACTCTACCAAAAGACAGAATAAAAAATAGAACTGAGGATATA
AAGTTTGCAATCAAAATTTTGATCGAATCACAATGGAAAATTTTTATTGCCTTAATGCCCTTAGTCATCATTTTTTTCCA
ACAAATTGCTTGGATTGCACCACTCAGTAATCTGATTGCTATCCCGATATTAAGCATGTTGGTTGTACCTTTAGATATTT
TTGCTGCATGTGTTTGGCTAATTTTTCCTTCATTAGGTCTAGTTTTATTCACCCTCAATAATATGTTGTTAAGCATACTA
ATCGGATTATTAGATATTTTGATGTCACTGACACCTGATTTACAAGGTATAAGTTATATCCCATTGTCGTTATTTGCTTT
GAGTGTCGGGATTTTTATTTTATTTATGCCGAAAGGAACGATACCTAAATCTTGGGGTTTAGTTTGTTTCTTACCTATTT
TATTCGGTGCAAAACAGCAAAAGACTATGCTAACCATTTTAGATGTGGGGCAGGGACAATCTGTATTTTTACAACAAGCT
CAGCATAACCTAATGATAGATACTGGTGGTTTATATAATGAAGAGATGTTCAGTTTAGGTGAGCGAGTCATTGTTCCATT
TCTTCGACAGCAGGGCATCGAAAAATTAGATCAAATGATTTTATCGCATCTCGATCAAGACCATAGTGGTGCTTTTCCAT
ATATTGAGCAAGTCCTCGAGATCACAAAGGTTTATGCAAATGAGAAAAATGAAAAATTGCCATTTAAAGATAATTTTTCT
TTTTGTCATCAAGGTCAAAAATGGAATTTAGCTCAAGCTCAGGTTGAGATTCTATCTCCAAAAATGGAGGAGCTGAGTTA
TGTTCAAAATCAACAAAATGAATATTCATGTGTTGTGTATATTGAGTTTGAACATGCCAAACCATATCGCAAATTCTTAA
TTATGGGGGATGCAGGTTGGGAAACAGAATATAAGCTATTAAAGCAATATCCAGACTTAGAGGTAGATGTCATTGTTTTG
GGGCATCATGGAAGCAAACATAGTTCAGCTTATGATTTTTTAGCAACAATTAAACCTAAATTGGCAATCGCTTCCGCAGG
TTTTGAAAATCGTTATGGTCATCCGAGTATTGAATTACAGCAAAGATTGCGAACATTAAATATTCCATTGTTGACGACCA
GCCAAAACGGATCGATCTCCTTTGAAATCAATCATGCAAATACCGTAATTTCCATGTACAGACAACAACGTAAATGGTTA
ACTCGGGTGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

53.144

100

0.536

  comA/comEC Acinetobacter baumannii strain A118

53.021

100

0.535

  comA/comEC Acinetobacter baylyi ADP1

49.197

100

0.495