Detailed information NTG0872105

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: RB208_RS11950
• Genome accession: NZ_CP133147
• Coordinates: 2479460..2479897 (-)
• Length: 145 a.a.
• NCBI ID: WP_007612572.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain Bacillius velezensis JYC520
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2474460..2484897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RB208_RS11900 (RB208_11905)	sinI	2474843..2475016 (+)	174	WP_032874029.1	anti-repressor SinI	Regulator
RB208_RS11905 (RB208_11910)	sinR	2475050..2475385 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
RB208_RS11910 (RB208_11915)	tasA	2475433..2476218 (-)	786	WP_032874027.1	biofilm matrix protein TasA	-
RB208_RS11915 (RB208_11920)	sipW	2476283..2476867 (-)	585	WP_032874025.1	signal peptidase I SipW	-
RB208_RS11920 (RB208_11925)	tapA	2476839..2477510 (-)	672	WP_032874023.1	amyloid fiber anchoring/assembly protein TapA	-
RB208_RS11925 (RB208_11930)	-	2477769..2478098 (+)	330	WP_032874021.1	DUF3889 domain-containing protein	-
RB208_RS11930 (RB208_11935)	-	2478139..2478318 (-)	180	WP_022552966.1	YqzE family protein	-
RB208_RS11935 (RB208_11940)	comGG	2478375..2478752 (-)	378	WP_032874019.1	competence type IV pilus minor pilin ComGG	Machinery gene
RB208_RS11940 (RB208_11945)	comGF	2478753..2479217 (-)	465	WP_223813077.1	competence type IV pilus minor pilin ComGF	-
RB208_RS11945 (RB208_11950)	comGE	2479162..2479476 (-)	315	WP_032874016.1	competence type IV pilus minor pilin ComGE	Machinery gene
RB208_RS11950 (RB208_11955)	comGD	2479460..2479897 (-)	438	WP_007612572.1	competence type IV pilus minor pilin ComGD	Machinery gene
RB208_RS11955 (RB208_11960)	comGC	2479887..2480195 (-)	309	WP_003153087.1	competence type IV pilus major pilin ComGC	Machinery gene
RB208_RS11960 (RB208_11965)	comGB	2480200..2481237 (-)	1038	WP_032874014.1	competence type IV pilus assembly protein ComGB	Machinery gene
RB208_RS11965 (RB208_11970)	comGA	2481224..2482294 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
RB208_RS11970 (RB208_11975)	-	2482491..2483441 (-)	951	WP_032874012.1	magnesium transporter CorA family protein	-
RB208_RS11975 (RB208_11980)	-	2483587..2484888 (+)	1302	WP_032874010.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16254.76 Da
• Isoelectric Point: 10.1850

>NTDB_id=872105 RB208_RS11950 WP_007612572.1 2479460..2479897(-) (comGD) [Bacillus velezensis strain Bacillius velezensis JYC520]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=872105 RB208_RS11950 WP_007612572.1 2479460..2479897(-) (comGD) [Bacillus velezensis strain Bacillius velezensis JYC520]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCATATTACACTTGTAACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATAACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	55.479	100	0.559