Detailed information NTG0871916

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RBU55_RS26810
• Genome accession: NZ_CP133110
• Coordinates: 5945623..5946495 (+)
• Length: 290 a.a.
• NCBI ID: WP_063433051.1
• Uniprot ID: A0AAX3FYP7
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5940623..5951495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBU55_RS26795 (RBU55_26795)	-	5942978..5943334 (-)	357	WP_025807489.1	BON domain-containing protein	-
RBU55_RS26800 (RBU55_26800)	-	5943623..5944039 (-)	417	WP_025807491.1	pilin	-
RBU55_RS26805 (RBU55_26805)	pilC	5944403..5945620 (+)	1218	WP_307948776.1	type II secretion system F family protein	Machinery gene
RBU55_RS26810 (RBU55_26810)	pilD	5945623..5946495 (+)	873	WP_063433051.1	A24 family peptidase	Machinery gene
RBU55_RS26815 (RBU55_26815)	coaE	5946492..5947115 (+)	624	WP_102677067.1	dephospho-CoA kinase	-
RBU55_RS26820 (RBU55_26820)	yacG	5947112..5947315 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
RBU55_RS26825 (RBU55_26825)	-	5947320..5947535 (-)	216	WP_025807496.1	hypothetical protein	-
RBU55_RS26830 (RBU55_26830)	-	5947601..5948290 (-)	690	WP_063433053.1	energy-coupling factor ABC transporter permease	-
RBU55_RS26835 (RBU55_26835)	-	5948287..5948754 (-)	468	WP_102677068.1	FAD/FMN-containing dehydrogenase	-
RBU55_RS26840 (RBU55_26840)	-	5949210..5950646 (+)	1437	WP_307948781.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32068.19 Da
• Isoelectric Point: 7.9950

>NTDB_id=871916 RBU55_RS26810 WP_063433051.1 5945623..5946495(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR
PWENIPVFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=871916 RBU55_RS26810 WP_063433051.1 5945623..5946495(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCATGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCACCGATCGGCCGGCG
CTATCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGTTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCCGACGTGCTGGTA
CTGCCCCTGTTGTGGCTGGGGCTGATCGTCAACGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG
GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	97.931	0.528
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	49.446	93.448	0.462
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448