Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RBU55_RS26805 Genome accession   NZ_CP133110
Coordinates   5944403..5945620 (+) Length   405 a.a.
NCBI ID   WP_307948776.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5939403..5950620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU55_RS26790 (RBU55_26790) - 5939860..5942775 (+) 2916 WP_307948774.1 DUF748 domain-containing protein -
  RBU55_RS26795 (RBU55_26795) - 5942978..5943334 (-) 357 WP_025807489.1 BON domain-containing protein -
  RBU55_RS26800 (RBU55_26800) - 5943623..5944039 (-) 417 WP_025807491.1 pilin -
  RBU55_RS26805 (RBU55_26805) pilC 5944403..5945620 (+) 1218 WP_307948776.1 type II secretion system F family protein Machinery gene
  RBU55_RS26810 (RBU55_26810) pilD 5945623..5946495 (+) 873 WP_063433051.1 A24 family peptidase Machinery gene
  RBU55_RS26815 (RBU55_26815) coaE 5946492..5947115 (+) 624 WP_102677067.1 dephospho-CoA kinase -
  RBU55_RS26820 (RBU55_26820) yacG 5947112..5947315 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  RBU55_RS26825 (RBU55_26825) - 5947320..5947535 (-) 216 WP_025807496.1 hypothetical protein -
  RBU55_RS26830 (RBU55_26830) - 5947601..5948290 (-) 690 WP_063433053.1 energy-coupling factor ABC transporter permease -
  RBU55_RS26835 (RBU55_26835) - 5948287..5948754 (-) 468 WP_102677068.1 FAD/FMN-containing dehydrogenase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44537.31 Da        Isoelectric Point: 10.3580

>NTDB_id=871915 RBU55_RS26805 WP_307948776.1 5944403..5945620(+) (pilC) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHNPSLIRTQLRKQGISPARVRKKSSSLFQRTPPIRARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLMAELKQDIAAGSSFTTALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLAGGLLLSVFGLR
HAHRHSPRFRQWLDVGLLKLPLVAPLMYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=871915 RBU55_RS26805 WP_307948776.1 5944403..5945620(+) (pilC) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATAACCCCTCGCTGATCAGGACCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGGTCAGGAAGAAATCCA
GTTCGCTGTTCCAGCGCACGCCGCCGATCAGGGCCCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGCGTGCCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGACAACCCGAACATGCGCAAACTGATGGCCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGCTTCACCACCGCATTGCGCAAGAGGCCGCGCTACTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAACAGGCCGGGGCCCTGGAAACCCTGCTGGAGCGAGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACGCGCATCCGCAAGGCCATGACTTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTCACGGGCAT
TCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACCCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGCGGGCGGTCTGCTGCTCAGTGTGTTCGGCCTGCGC
CATGCCCACCGGCACTCACCGCGCTTTCGCCAGTGGCTGGACGTGGGCCTGCTGAAACTGCCGTTGGTAGCGCCGCTGAT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACCTTCGCCGCCGGGGTACCACTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACTGGCAATCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAGGACGTGGCGACTGGCATG
CAGTTGCATTTTTCCATGCGCGCGTCCGGCATCTTTCCCGGCATGGCCATCCAGATGACCGCCATCGGCGAAGAGTCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTGGCGATCCACTATGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATTTTCCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.938

100

0.649
  pilC Acinetobacter baylyi ADP1

55.637

100

0.56
  pilC Acinetobacter baumannii D1279779

54.657

100

0.551
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

41.687

99.506

0.415
  pilG Neisseria meningitidis 44/76-A

40.943

99.506

0.407
  pilC Vibrio cholerae strain A1552

41.582

96.79

0.402
  pilC Vibrio campbellii strain DS40M4

38.308

99.259

0.38