Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RBU63_RS07640 Genome accession   NZ_CP133092
Coordinates   1683246..1685459 (+) Length   737 a.a.
NCBI ID   WP_307944703.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain JP2-207     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1678246..1690459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU63_RS07610 - 1679090..1679329 (-) 240 WP_028690971.1 DUF3077 domain-containing protein -
  RBU63_RS07615 - 1679326..1679565 (-) 240 WP_062361654.1 hypothetical protein -
  RBU63_RS07620 - 1680112..1680735 (+) 624 WP_069017520.1 glutathione S-transferase -
  RBU63_RS07625 - 1680868..1681800 (+) 933 WP_307944700.1 ABC transporter ATP-binding protein -
  RBU63_RS07630 - 1681797..1682576 (+) 780 WP_028690974.1 ABC transporter permease -
  RBU63_RS07635 - 1682460..1683101 (-) 642 WP_139121109.1 DUF2062 domain-containing protein -
  RBU63_RS07640 comA 1683246..1685459 (+) 2214 WP_307944703.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RBU63_RS07645 exbB 1685620..1686255 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RBU63_RS07650 - 1686252..1686686 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  RBU63_RS07655 lpxK 1686686..1687690 (+) 1005 WP_186597288.1 tetraacyldisaccharide 4'-kinase -
  RBU63_RS07660 - 1687725..1687910 (+) 186 WP_011532874.1 Trm112 family protein -
  RBU63_RS07665 kdsB 1687907..1688671 (+) 765 WP_028690979.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RBU63_RS07670 - 1688671..1689135 (+) 465 WP_028690980.1 low molecular weight protein-tyrosine-phosphatase -
  RBU63_RS07675 murB 1689132..1690151 (+) 1020 WP_088852509.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79685.49 Da        Isoelectric Point: 11.2422

>NTDB_id=871809 RBU63_RS07640 WP_307944703.1 1683246..1685459(+) (comA) [Pseudomonas mosselii strain JP2-207]
MRTGMLALVLGLLSLRSLPALPPVGWLIPLLLLALACLRTRARPLGWFVLGGCWACWSAQQALDDRLPAALDGRTLWLEG
RVVGLPTRTERGVRFELEQPQSRRARLPQRVQLSWFEGPPLRAGEHWRLAVNLRRPKGLLNPHGPDQEATLLARRVGATG
TVKAGMRQGEEASSWRDGLRQRLLATDAHGREAALAALVLGDGAGLAREDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGGWPRRLPWLPWACGLAMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAWVPLLMALSGVLLVEPL
ASLLPGFWLSFAAVAVLVLCFAARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPVSLSAPLANLLAVPWLSWGVLPLAL
LGTALLPVPGLGEGMLWLAGLSLDGLFAVLTRLAGLRPAWIPEPLPLWAWLLVCLGAVLVLLPRGVPLRAPGVVLLLALW
APREQVPPGQVEVWQLDVGQGLAVLLRTRNHALLYDAGPAQGGSDLGETVVLPTLRKLGVKALDMMLISHGHADHAGGAA
AVRRGVSVARVLAGEVAGLEAASLCRSGERWQWDGVDFELWHWPQGASSNERSCVLRVQAKGERLLLAGDMEAGAERAWL
AATDDPRVDWLQAPHHGSRTSSSEPFVQATAPRGVLVSRGRHNGFGHPHGQVIERYRRHGVVVHDTALEGALRLVLGSRG
GVEGVRRERRFWRAIED

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=871809 RBU63_RS07640 WP_307944703.1 1683246..1685459(+) (comA) [Pseudomonas mosselii strain JP2-207]
ATGCGCACAGGGATGCTGGCGCTGGTCCTCGGGCTGTTGAGCCTGCGCTCTTTACCTGCCCTGCCACCGGTCGGATGGCT
GATTCCATTGCTGTTGCTGGCCCTGGCCTGCCTGCGCACCCGGGCCAGGCCGCTGGGCTGGTTCGTGCTGGGTGGCTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCCCTGGACGACCGCCTGCCTGCCGCGCTGGATGGCCGCACGCTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGACCCGTACCGAGCGCGGCGTGCGTTTCGAGCTGGAGCAGCCGCAGTCACGTCGGGCCCGGTT
GCCGCAGCGGGTGCAATTGAGCTGGTTCGAGGGGCCGCCGCTGCGAGCGGGGGAGCACTGGCGGCTGGCGGTCAACCTGC
GTCGGCCGAAGGGCCTGCTCAACCCCCATGGCCCGGATCAGGAGGCCACGCTGTTGGCGCGGCGGGTCGGTGCCACCGGC
ACGGTCAAGGCCGGCATGCGCCAGGGCGAGGAGGCCAGCAGTTGGCGCGACGGCCTGCGCCAGCGCCTGCTGGCCACCGA
TGCCCATGGCCGTGAGGCGGCGTTGGCCGCCCTGGTGCTCGGGGATGGCGCAGGCCTGGCGCGGGAGGACTGGCAGGTGC
TGCAGGCCACCGGCACGGTACACCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTGGCCGGATTGGTCTACGGGCTG
GTGGCGGGGCTGGCGCGCCTGGGGGGGTGGCCACGGCGCCTGCCGTGGCTGCCCTGGGCCTGTGGCCTGGCGATGGCGGC
GGCATTGGGCTACGGCTGGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCGTGCCTGATGCTGGCGGTGGTGCTGCTCT
GGCGCTTGCGCTTTCGCCATCTGGGCGCCTGGGTGCCGTTGCTGATGGCGCTGTCGGGCGTGCTGCTGGTCGAGCCGCTG
GCCAGCCTGTTGCCGGGTTTCTGGCTGTCGTTCGCTGCCGTGGCGGTGCTGGTGCTGTGTTTTGCCGCCCGGCTGGGTGC
CTGGCGGCCCTGGCAGGCCTGGACCCGCGCCCAGTGGGTGATCGCCGTGGGGTTGCTGCCGGTGCTGCTGGCCTTGGGGC
TGCCCGTCAGTCTCAGCGCGCCGCTGGCCAATCTGCTGGCGGTGCCGTGGCTCAGCTGGGGCGTGCTGCCGTTGGCGTTG
CTGGGTACGGCCCTGCTGCCGGTGCCTGGGCTGGGGGAGGGGATGCTGTGGCTGGCGGGCCTGTCGTTGGATGGGTTGTT
TGCCGTGCTGACGCGATTGGCAGGGCTGCGGCCGGCCTGGATTCCCGAGCCACTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGCGCCGTGCTGGTGTTGCTGCCACGGGGCGTGCCGTTGCGGGCGCCGGGCGTGGTCCTGCTGCTGGCGCTGTGG
GCGCCACGCGAACAGGTGCCGCCGGGGCAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGGCGGTGCTGCTGCG
CACCCGCAATCACGCGCTGCTGTATGACGCAGGCCCGGCCCAGGGTGGCAGTGACCTGGGCGAGACGGTGGTGCTGCCGA
CCTTGCGCAAGCTTGGGGTGAAGGCGCTGGATATGATGCTGATCAGCCATGGCCATGCCGACCATGCCGGTGGGGCGGCG
GCCGTGCGGCGTGGGGTTTCGGTGGCGCGAGTGCTGGCCGGCGAGGTTGCCGGGCTGGAAGCGGCCTCGCTGTGCCGCAG
TGGCGAGCGCTGGCAGTGGGATGGCGTCGATTTCGAGCTCTGGCACTGGCCGCAGGGGGCTTCCAGCAACGAACGCTCCT
GTGTGTTGCGCGTGCAGGCCAAGGGCGAACGCCTGCTGCTGGCCGGGGACATGGAGGCCGGTGCGGAGCGGGCCTGGCTG
GCCGCGACCGACGATCCTCGGGTGGACTGGTTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCAGCGAGCCGTTCGT
CCAGGCCACGGCGCCGCGCGGGGTGTTGGTTTCCCGGGGGCGGCACAATGGTTTCGGGCATCCCCATGGGCAGGTGATCG
AGCGCTATCGCCGGCACGGGGTGGTGGTGCATGACACGGCGTTGGAGGGGGCGTTGCGGTTGGTGCTGGGGAGTCGGGGT
GGGGTGGAAGGTGTGCGGCGGGAACGTCGGTTCTGGCGCGCCATCGAGGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-664)

Domain of unknown function (DUF4131) (DUF4131)

(20-164)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.028

97.422

0.585
  comA Ralstonia pseudosolanacearum GMI1000

35.522

100

0.411