Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RBU63_RS07645 Genome accession   NZ_CP133092
Coordinates   1685620..1686255 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas mosselii strain JP2-207     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680620..1691255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU63_RS07625 - 1680868..1681800 (+) 933 WP_307944700.1 ABC transporter ATP-binding protein -
  RBU63_RS07630 - 1681797..1682576 (+) 780 WP_028690974.1 ABC transporter permease -
  RBU63_RS07635 - 1682460..1683101 (-) 642 WP_139121109.1 DUF2062 domain-containing protein -
  RBU63_RS07640 comA 1683246..1685459 (+) 2214 WP_307944703.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RBU63_RS07645 exbB 1685620..1686255 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RBU63_RS07650 - 1686252..1686686 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  RBU63_RS07655 lpxK 1686686..1687690 (+) 1005 WP_186597288.1 tetraacyldisaccharide 4'-kinase -
  RBU63_RS07660 - 1687725..1687910 (+) 186 WP_011532874.1 Trm112 family protein -
  RBU63_RS07665 kdsB 1687907..1688671 (+) 765 WP_028690979.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RBU63_RS07670 - 1688671..1689135 (+) 465 WP_028690980.1 low molecular weight protein-tyrosine-phosphatase -
  RBU63_RS07675 murB 1689132..1690151 (+) 1020 WP_088852509.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=871810 RBU63_RS07645 WP_028690976.1 1685620..1686255(+) (exbB) [Pseudomonas mosselii strain JP2-207]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=871810 RBU63_RS07645 WP_028690976.1 1685620..1686255(+) (exbB) [Pseudomonas mosselii strain JP2-207]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCGATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCTATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829