Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU39_RS20465 Genome accession   NZ_CP148426
Coordinates   3975336..3975965 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323CEC0014     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3970336..3980965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU39_RS20450 (WHU39_20450) helD 3970578..3972632 (-) 2055 WP_000420536.1 DNA helicase IV -
  WHU39_RS20455 (WHU39_20455) yccF 3972755..3973201 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU39_RS20460 (WHU39_20460) yccS 3973211..3975373 (+) 2163 WP_000875061.1 YccS family putative transporter -
  WHU39_RS20465 (WHU39_20465) sxy/tfoX 3975336..3975965 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU39_RS20470 (WHU39_20470) sulA 3976184..3976693 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  WHU39_RS20475 (WHU39_20475) ompA 3977050..3978102 (+) 1053 WP_032202393.1 porin OmpA -
  WHU39_RS20480 (WHU39_20480) matP 3978178..3978630 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU39_RS20485 (WHU39_20485) ycbZ 3978816..3980576 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=871810 WHU39_RS20465 WP_000839153.1 3975336..3975965(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0014]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=871810 WHU39_RS20465 WP_000839153.1 3975336..3975965(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0014]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1