Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RBH91_RS19755 Genome accession   NZ_CP133085
Coordinates   3934972..3935661 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus swezeyi strain EA208     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3929972..3940661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS19720 - 3930135..3930617 (-) 483 WP_404802520.1 flagellar protein FlgN -
  RBH91_RS19725 flgM 3930632..3930898 (-) 267 WP_076761132.1 flagellar biosynthesis anti-sigma factor FlgM -
  RBH91_RS19730 - 3930978..3931397 (-) 420 WP_076761133.1 TIGR03826 family flagellar region protein -
  RBH91_RS19735 comFC 3931456..3932190 (-) 735 WP_307892644.1 ComF family protein Machinery gene
  RBH91_RS19740 - 3932162..3932431 (-) 270 WP_076761135.1 late competence development ComFB family protein -
  RBH91_RS19745 comFA 3932489..3933877 (-) 1389 WP_307894799.1 DEAD/DEAH box helicase Machinery gene
  RBH91_RS19750 - 3934011..3934853 (-) 843 WP_307892645.1 DegV family protein -
  RBH91_RS19755 degU 3934972..3935661 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  RBH91_RS19760 degS 3935743..3936900 (-) 1158 WP_076761138.1 histidine kinase Regulator
  RBH91_RS19765 - 3937124..3937762 (+) 639 WP_307892646.1 YigZ family protein -
  RBH91_RS19770 - 3937777..3938856 (+) 1080 WP_307892647.1 LCP family protein -
  RBH91_RS19775 - 3938924..3940222 (-) 1299 WP_307892648.1 DUF1668 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=871768 RBH91_RS19755 WP_003185730.1 3934972..3935661(-) (degU) [Bacillus swezeyi strain EA208]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=871768 RBH91_RS19755 WP_003185730.1 3934972..3935661(-) (degU) [Bacillus swezeyi strain EA208]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTAAAACGGATTTTGGACTTCGAACC
TACCTTTGAGGTAGTAGCTGAAGGAGACGACGGTGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTGA
TCATGGATATTAATATGCCGAATGTAAACGGAGTAGAAGCGACAAAACAGCTGGTCGATCTGTACCCGGAATCAAAGGTT
ATTATTTTGTCCATTCATGACGACGAAAACTATGTAACACATGCATTAAAAACAGGTGCCCGCGGTTATCTGCTGAAAGA
AATGGACGCTGATACACTGATAGAAGCTGTAAAAGTAGTGGCTGAAGGCGGATCTTACCTTCATCCTAAGGTAACGCATA
ATCTTGTCAACGAATTTCGCCGTCTGGCAACGAGCGGTGTTTCATCACACGCTCAGCATGAAGTGTATCCGGAAATTCGC
AGACCTCTGCACATTCTCACGAGACGGGAATGCGAGGTTTTACAGATGCTTGCAGACGGAAAGAGCAATCGCGGCATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCTTGCAAAAAATGAATGTGAACGACAGAA
CTCAAGCGGTCGTTGTGGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987