Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RBH91_RS19745 Genome accession   NZ_CP133085
Coordinates   3932489..3933877 (-) Length   462 a.a.
NCBI ID   WP_307894799.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3927489..3938877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS19710 flgL 3927674..3928585 (-) 912 WP_307892641.1 flagellar hook-associated protein FlgL -
  RBH91_RS19715 flgK 3928596..3930119 (-) 1524 WP_307892642.1 flagellar hook-associated protein FlgK -
  RBH91_RS19720 - 3930135..3930617 (-) 483 WP_404802520.1 flagellar protein FlgN -
  RBH91_RS19725 flgM 3930632..3930898 (-) 267 WP_076761132.1 flagellar biosynthesis anti-sigma factor FlgM -
  RBH91_RS19730 - 3930978..3931397 (-) 420 WP_076761133.1 TIGR03826 family flagellar region protein -
  RBH91_RS19735 comFC 3931456..3932190 (-) 735 WP_307892644.1 ComF family protein Machinery gene
  RBH91_RS19740 - 3932162..3932431 (-) 270 WP_076761135.1 late competence development ComFB family protein -
  RBH91_RS19745 comFA 3932489..3933877 (-) 1389 WP_307894799.1 DEAD/DEAH box helicase Machinery gene
  RBH91_RS19750 - 3934011..3934853 (-) 843 WP_307892645.1 DegV family protein -
  RBH91_RS19755 degU 3934972..3935661 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  RBH91_RS19760 degS 3935743..3936900 (-) 1158 WP_076761138.1 histidine kinase Regulator
  RBH91_RS19765 - 3937124..3937762 (+) 639 WP_307892646.1 YigZ family protein -
  RBH91_RS19770 - 3937777..3938856 (+) 1080 WP_307892647.1 LCP family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 52630.03 Da        Isoelectric Point: 10.1193

>NTDB_id=871767 RBH91_RS19745 WP_307894799.1 3932489..3933877(-) (comFA) [Bacillus swezeyi strain EA208]
MEHPASSYSRELQSRLEVRHLLKSELPFPERVIDWHIQNDLIKAEESIKKTKRGFICLRCGQRERSFFARYPCYRCNKNC
VYCRSCVMMGRVSECTPLLTWNGNGRHGCAPVQMEWKGELSAGQEKAARSIVEAIRKKEELLIWAVCGSGKTELLFQGIE
FALNKGLRVCIATPRTDVVLELAPRFHQAFQSVQIAALFGGSTDNGILSPLVISTTHQLLRYKEAFDVIIIDEVDAFPYA
IDQTLQYAVKKSRKPQSTRIYLTATPSEQMKRNADNGRLRTIQIPARYHRRPLPEPAFKWCGNWKRYLSREILPFSVKRW
LFKHKELKQPVFLFVPSIPALKSAVSLLKKGQFQAEGVHADDPDRNEKVNSFREEKLDVLVATTILERGVTVKKAQVGVL
GAESAVFTESALVQMAGRAGRHPHFTEGDVCFFHFGKTASMNAARRHIRNMNKLAKKEKLID

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=871767 RBH91_RS19745 WP_307894799.1 3932489..3933877(-) (comFA) [Bacillus swezeyi strain EA208]
ATCGAACACCCGGCATCCTCTTATTCCCGCGAATTGCAATCCCGTTTGGAGGTGCGCCATCTTCTGAAAAGTGAGCTGCC
TTTTCCTGAACGTGTTATTGATTGGCATATCCAAAACGATCTGATAAAAGCCGAGGAATCGATCAAAAAAACGAAAAGAG
GCTTTATTTGCTTGAGATGCGGTCAGCGCGAACGATCATTTTTCGCCCGATATCCTTGTTATAGGTGCAATAAAAATTGC
GTGTACTGCCGATCTTGCGTGATGATGGGCAGGGTGAGCGAATGTACGCCTCTTTTGACTTGGAATGGGAATGGCCGGCA
TGGATGTGCGCCCGTTCAAATGGAATGGAAAGGCGAGCTGTCGGCTGGTCAGGAAAAAGCGGCCAGGTCTATTGTAGAAG
CCATACGCAAAAAAGAGGAGCTTTTGATCTGGGCAGTTTGCGGTTCAGGCAAAACAGAGCTTCTGTTTCAAGGGATCGAA
TTCGCTCTGAACAAAGGCTTGAGAGTATGTATCGCCACTCCGAGAACAGATGTGGTTCTCGAACTTGCTCCGAGGTTTCA
TCAAGCTTTTCAAAGTGTGCAAATTGCTGCTTTGTTCGGAGGGAGTACAGACAATGGAATCCTTTCGCCACTTGTCATTT
CAACCACTCATCAGCTGCTCCGGTATAAAGAAGCATTTGACGTGATCATCATTGATGAAGTCGACGCTTTTCCATACGCT
ATTGATCAAACACTGCAATACGCCGTGAAAAAATCGCGGAAACCGCAGAGCACCCGTATCTACTTAACAGCCACCCCGTC
AGAACAAATGAAGCGGAACGCAGATAACGGAAGGCTGCGGACCATTCAGATTCCTGCCAGATACCATCGGAGGCCATTGC
CTGAGCCGGCATTTAAATGGTGCGGAAACTGGAAGCGGTATCTCAGCAGAGAAATACTGCCCTTCTCCGTTAAGAGATGG
CTTTTCAAACATAAAGAACTGAAGCAGCCGGTTTTTTTATTTGTGCCCTCAATTCCAGCGCTTAAATCGGCTGTCAGCCT
GCTGAAAAAAGGTCAATTTCAGGCCGAAGGCGTTCATGCTGATGACCCTGACAGAAATGAAAAAGTGAACTCGTTTAGAG
AAGAAAAGCTTGATGTTTTAGTGGCGACAACCATTTTGGAAAGAGGGGTCACGGTTAAAAAAGCTCAGGTAGGCGTACTG
GGTGCGGAGTCAGCGGTCTTCACCGAGAGCGCGCTTGTCCAAATGGCCGGCAGAGCGGGCAGACACCCGCATTTTACAGA
AGGAGACGTCTGTTTTTTTCACTTCGGCAAAACCGCAAGCATGAATGCGGCCCGACGCCATATTCGAAATATGAATAAAT
TGGCTAAAAAGGAAAAATTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-422)

Type III restriction enzyme, res subunit (ResIII)

(119-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

59.737

98.918

0.591