Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RBH91_RS19735 Genome accession   NZ_CP133085
Coordinates   3931456..3932190 (-) Length   244 a.a.
NCBI ID   WP_307892644.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3926456..3937190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS19700 fliW 3926605..3927036 (-) 432 WP_307892639.1 flagellar assembly protein FliW -
  RBH91_RS19705 - 3927058..3927624 (-) 567 WP_307892640.1 DUF6470 family protein -
  RBH91_RS19710 flgL 3927674..3928585 (-) 912 WP_307892641.1 flagellar hook-associated protein FlgL -
  RBH91_RS19715 flgK 3928596..3930119 (-) 1524 WP_307892642.1 flagellar hook-associated protein FlgK -
  RBH91_RS19720 - 3930135..3930617 (-) 483 WP_404802520.1 flagellar protein FlgN -
  RBH91_RS19725 flgM 3930632..3930898 (-) 267 WP_076761132.1 flagellar biosynthesis anti-sigma factor FlgM -
  RBH91_RS19730 - 3930978..3931397 (-) 420 WP_076761133.1 TIGR03826 family flagellar region protein -
  RBH91_RS19735 comFC 3931456..3932190 (-) 735 WP_307892644.1 ComF family protein Machinery gene
  RBH91_RS19740 - 3932162..3932431 (-) 270 WP_076761135.1 late competence development ComFB family protein -
  RBH91_RS19745 comFA 3932489..3933877 (-) 1389 WP_307894799.1 DEAD/DEAH box helicase Machinery gene
  RBH91_RS19750 - 3934011..3934853 (-) 843 WP_307892645.1 DegV family protein -
  RBH91_RS19755 degU 3934972..3935661 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  RBH91_RS19760 degS 3935743..3936900 (-) 1158 WP_076761138.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 28106.55 Da        Isoelectric Point: 10.1300

>NTDB_id=871766 RBH91_RS19735 WP_307892644.1 3931456..3932190(-) (comFC) [Bacillus swezeyi strain EA208]
MITRIAKTNRKEEHNLNCLICEAPLSHSLSWHALFFLHAEEKICGECKESFIEIKGTVCRKCGRPQDNEKLCRDCFKWEA
DAKTRSLLQQNRSVYLYNSFMKETLSRFKFRGDAALVSAFAPSFIRTFQKHFRQTRFALVPIPLSEERKIERGFNQAERL
ASLLKRPVLHPLIRTENEKQSKKSRAERLKQKTVFKTDKGSVKGLSVLLIDDLYTTGATLHHAARCLKVDGEADLVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=871766 RBH91_RS19735 WP_307892644.1 3931456..3932190(-) (comFC) [Bacillus swezeyi strain EA208]
ATGATAACCCGCATTGCGAAAACAAATAGAAAGGAAGAGCATAACCTGAATTGTTTAATCTGTGAAGCGCCTCTTTCACA
TTCTCTTTCATGGCATGCCTTGTTCTTTTTGCATGCGGAAGAAAAAATATGCGGAGAATGTAAAGAGAGCTTTATCGAGA
TCAAAGGAACTGTATGCCGTAAATGCGGCAGGCCGCAAGACAATGAAAAGCTGTGCAGGGACTGTTTCAAATGGGAAGCT
GATGCGAAAACGCGCTCGCTTCTTCAGCAAAACCGCTCCGTATACCTTTACAACTCTTTTATGAAAGAAACGCTCTCCCG
GTTTAAGTTCAGAGGCGATGCCGCACTTGTCTCCGCTTTTGCTCCCTCATTTATCCGCACCTTCCAAAAACACTTCCGCC
AAACCCGCTTCGCTTTAGTACCGATTCCCCTAAGCGAAGAACGCAAAATCGAAAGAGGCTTCAATCAGGCAGAGCGGCTT
GCTTCATTATTAAAAAGGCCTGTTCTTCACCCGTTGATCAGAACGGAAAATGAAAAACAATCCAAAAAAAGCAGAGCAGA
ACGTTTGAAGCAGAAAACGGTCTTTAAAACAGACAAAGGATCTGTGAAAGGCCTGAGCGTCTTACTGATTGATGACTTGT
ATACAACAGGCGCGACACTCCACCATGCAGCGAGGTGTCTGAAGGTTGACGGAGAAGCAGATTTGGTATCATCTTACACA
TTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

54.978

94.672

0.52