Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   RBH92_RS00585 Genome accession   NZ_CP133083
Coordinates   117299..117589 (+) Length   96 a.a.
NCBI ID   WP_307932812.1    Uniprot ID   -
Organism   Nitrosomonas sp. sh817     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112299..122589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH92_RS00565 (RBH92_00570) - 112891..113808 (+) 918 WP_307932808.1 D-alanine--D-alanine ligase -
  RBH92_RS00570 (RBH92_00575) - 113798..114571 (+) 774 WP_307932809.1 cell division protein FtsQ/DivIB -
  RBH92_RS00575 (RBH92_00580) ftsA 114592..115830 (+) 1239 WP_307932810.1 cell division protein FtsA -
  RBH92_RS00580 (RBH92_00585) ftsZ 115908..117065 (+) 1158 WP_307932811.1 cell division protein FtsZ -
  RBH92_RS00585 (RBH92_00590) comE 117299..117589 (+) 291 WP_307932812.1 helix-hairpin-helix domain-containing protein Machinery gene
  RBH92_RS00590 (RBH92_00595) cysM 117690..118580 (+) 891 WP_307933983.1 cysteine synthase CysM -
  RBH92_RS00595 (RBH92_00600) ybgC 118602..119024 (+) 423 WP_307932813.1 tol-pal system-associated acyl-CoA thioesterase -
  RBH92_RS00600 (RBH92_00605) tolQ 119021..119701 (+) 681 WP_307932814.1 protein TolQ -
  RBH92_RS00605 (RBH92_00610) tolR 119720..120133 (+) 414 WP_307932815.1 protein TolR -
  RBH92_RS00610 (RBH92_00615) tolA 120144..121205 (+) 1062 WP_307932816.1 cell envelope integrity protein TolA -
  RBH92_RS00615 (RBH92_00620) tolB 121254..122552 (+) 1299 WP_307932817.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10139.73 Da        Isoelectric Point: 6.2924

>NTDB_id=871682 RBH92_RS00585 WP_307932812.1 117299..117589(+) (comE) [Nitrosomonas sp. sh817]
MKQLFIFVTLLFLFTGTAFAAVNLNTATQAELESLQGIGPAKAKAIVEYREKNGAFTSVDDLAKVAGVGPGIIKQIRDAV
TVTVAAEQSAEAPEKK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=871682 RBH92_RS00585 WP_307932812.1 117299..117589(+) (comE) [Nitrosomonas sp. sh817]
ATGAAGCAATTATTTATTTTTGTAACTCTGCTATTCCTGTTCACTGGTACAGCATTTGCAGCGGTCAATCTGAATACGGC
AACACAAGCGGAACTGGAAAGCTTGCAAGGGATCGGTCCTGCAAAAGCAAAAGCGATCGTAGAGTACCGTGAGAAAAATG
GCGCTTTTACTTCGGTAGATGATTTAGCCAAGGTAGCCGGCGTGGGACCTGGCATTATCAAGCAAATACGCGATGCGGTT
ACGGTTACAGTTGCAGCGGAACAAAGCGCAGAGGCTCCTGAGAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

50.538

96.875

0.49
  comE Neisseria gonorrhoeae MS11

50.538

96.875

0.49
  comE Neisseria gonorrhoeae MS11

50.538

96.875

0.49
  comE Neisseria gonorrhoeae MS11

50.538

96.875

0.49
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.579

79.167

0.448