Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RA957_RS12700 Genome accession   NZ_CP133077
Coordinates   2514029..2514325 (-) Length   98 a.a.
NCBI ID   WP_011231915.1    Uniprot ID   U2X350
Organism   Geobacillus kaustophilus strain T-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2509029..2519325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA957_RS12665 (RA957_12665) - 2509629..2511293 (+) 1665 WP_011231908.1 DEAD/DEAH box helicase -
  RA957_RS12670 (RA957_12670) - 2511280..2512074 (+) 795 WP_011231909.1 YqhG family protein -
  RA957_RS12675 (RA957_12675) - 2512177..2512356 (-) 180 WP_011231910.1 YqzE family protein -
  RA957_RS12680 (RA957_12680) comGG 2512403..2512792 (-) 390 WP_047758063.1 competence type IV pilus minor pilin ComGG -
  RA957_RS12685 (RA957_12685) comGF 2512867..2513313 (-) 447 WP_047758064.1 competence type IV pilus minor pilin ComGF -
  RA957_RS12690 (RA957_12690) - 2513292..2513618 (-) 327 WP_047758065.1 type II secretion system protein -
  RA957_RS12695 (RA957_12695) comGD 2513602..2514039 (-) 438 WP_011231914.1 competence type IV pilus minor pilin ComGD -
  RA957_RS12700 (RA957_12700) comGC 2514029..2514325 (-) 297 WP_011231915.1 competence type IV pilus major pilin ComGC Machinery gene
  RA957_RS12705 (RA957_12705) comGB 2514528..2515556 (-) 1029 WP_144329562.1 competence type IV pilus assembly protein ComGB -
  RA957_RS12710 (RA957_12710) comGA 2515553..2516626 (-) 1074 WP_011231917.1 competence type IV pilus ATPase ComGA Machinery gene
  RA957_RS12715 (RA957_12715) - 2516819..2517517 (+) 699 WP_011231918.1 metalloregulator ArsR/SmtB family transcription factor -
  RA957_RS12720 (RA957_12720) - 2517676..2517918 (+) 243 WP_008879854.1 DUF2626 family protein -
  RA957_RS12725 (RA957_12725) - 2518002..2519135 (-) 1134 WP_119878023.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10749.59 Da        Isoelectric Point: 7.2422

>NTDB_id=871619 RA957_RS12700 WP_011231915.1 2514029..2514325(-) (comGC) [Geobacillus kaustophilus strain T-1]
MNQKGFTLIEMLIVMMVISVLLLIAIPNMTKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISANGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=871619 RA957_RS12700 WP_011231915.1 2514029..2514325(-) (comGC) [Geobacillus kaustophilus strain T-1]
ATGAATCAAAAGGGATTCACATTGATCGAAATGTTGATCGTTATGATGGTGATTTCTGTCCTGCTGCTGATTGCCATTCC
GAATATGACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCGATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2X350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.747

92.857

0.49
  comGC Staphylococcus aureus MW2

41.935

94.898

0.398
  comGC Staphylococcus aureus N315

41.935

94.898

0.398