Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RBI12_RS17525 Genome accession   NZ_CP133054
Coordinates   3642533..3643945 (+) Length   470 a.a.
NCBI ID   WP_017481910.1    Uniprot ID   A0A6S4VFI4
Organism   Acinetobacter pittii strain A774     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3637533..3648945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS17505 (RBI12_17570) thrC 3637789..3638928 (+) 1140 WP_002048893.1 threonine synthase -
  RBI12_RS17510 (RBI12_17575) pbpG 3639036..3640082 (-) 1047 WP_005804058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RBI12_RS17515 (RBI12_17580) gacA 3640295..3640930 (+) 636 WP_002121174.1 response regulator -
  RBI12_RS17520 (RBI12_17585) pilS 3640941..3642509 (+) 1569 WP_378216870.1 sensor histidine kinase Regulator
  RBI12_RS17525 (RBI12_17590) pilR 3642533..3643945 (+) 1413 WP_017481910.1 sigma-54 dependent transcriptional regulator Regulator
  RBI12_RS17530 (RBI12_17595) ctpA 3643949..3645133 (-) 1185 WP_002121269.1 S41 family peptidase -
  RBI12_RS17535 (RBI12_17600) gpmI 3645149..3646696 (-) 1548 WP_005804050.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  RBI12_RS17540 (RBI12_17605) lptG 3646823..3647893 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52609.70 Da        Isoelectric Point: 6.5594

>NTDB_id=871567 RBI12_RS17525 WP_017481910.1 3642533..3643945(+) (pilR) [Acinetobacter pittii strain A774]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPAVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGKEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=871567 RBI12_RS17525 WP_017481910.1 3642533..3643945(+) (pilR) [Acinetobacter pittii strain A774]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGCTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCTGGAGCTTTTGATTTTGTCAGCAAACC
TATTAACCAAATTCACTTAGATCAATTGTTAAAAAAGGCGCTCAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCTAATCTGATTCACCGATTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGATAAACAAGGTCTTATTTTATCAGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTACGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGGGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGGCTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACATTCCGTTCTTTAC
GCTATCGACTAAAAAAGTTTGGCTTAGATACTGAAATGGGAAAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S4VFI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496