Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RBI12_RS17520 Genome accession   NZ_CP133054
Coordinates   3640941..3642509 (+) Length   522 a.a.
NCBI ID   WP_378216870.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A774     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635941..3647509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS17500 (RBI12_17565) hom 3636433..3637734 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  RBI12_RS17505 (RBI12_17570) thrC 3637789..3638928 (+) 1140 WP_002048893.1 threonine synthase -
  RBI12_RS17510 (RBI12_17575) pbpG 3639036..3640082 (-) 1047 WP_005804058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RBI12_RS17515 (RBI12_17580) gacA 3640295..3640930 (+) 636 WP_002121174.1 response regulator -
  RBI12_RS17520 (RBI12_17585) pilS 3640941..3642509 (+) 1569 WP_378216870.1 sensor histidine kinase Regulator
  RBI12_RS17525 (RBI12_17590) pilR 3642533..3643945 (+) 1413 WP_017481910.1 sigma-54 dependent transcriptional regulator Regulator
  RBI12_RS17530 (RBI12_17595) ctpA 3643949..3645133 (-) 1185 WP_002121269.1 S41 family peptidase -
  RBI12_RS17535 (RBI12_17600) gpmI 3645149..3646696 (-) 1548 WP_005804050.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59129.63 Da        Isoelectric Point: 6.2829

>NTDB_id=871566 RBI12_RS17520 WP_378216870.1 3640941..3642509(+) (pilS) [Acinetobacter pittii strain A774]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFISTQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSFLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=871566 RBI12_RS17520 WP_378216870.1 3640941..3642509(+) (pilS) [Acinetobacter pittii strain A774]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGTTTTAAGTTTATTTCAACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCTTTGCTCATAACATTACTTGCAG
TCATTGCGGTTATTTATCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGTTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTTTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAATTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCACAACAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCTATTGTTCAAGCAAATGAATTACTCAAAGATAGTGACGCGGAACAGCA
AAATACTTTGCGCAATATGATTGGTAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACATATCCCATCCAGATTGAATTAAACGACTTCTTAAAAACGTTATTAGATGAAGATCTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941