Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RBI12_RS03490 Genome accession   NZ_CP133054
Coordinates   712236..712619 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A774     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 707236..717619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS03480 (RBI12_03485) nolF 710135..711244 (-) 1110 WP_078224109.1 efflux RND transporter periplasmic adaptor subunit -
  RBI12_RS03485 (RBI12_03490) - 711313..711951 (-) 639 WP_017400247.1 hypothetical protein -
  RBI12_RS03490 (RBI12_03495) pilG 712236..712619 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  RBI12_RS03495 (RBI12_03500) pilH 712642..713004 (+) 363 WP_002116220.1 PleD family two-component system response regulator -
  RBI12_RS03500 (RBI12_03505) pilI 713065..713601 (+) 537 WP_002116439.1 chemotaxis protein CheW -
  RBI12_RS03505 (RBI12_03510) pilJ 713644..715722 (+) 2079 WP_017482145.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=871543 RBI12_RS03490 WP_000389061.1 712236..712619(+) (pilG) [Acinetobacter pittii strain A774]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=871543 RBI12_RS03490 WP_000389061.1 712236..712619(+) (pilG) [Acinetobacter pittii strain A774]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTGATTGATGACTCAAAAACCATTCGCCGTACAGCAGAAACCTTATT
ACAGCGCGAAGGCTGTGAAGTCATTACTGCTGTGGATGGATTTGAAGCTTTGTCCAAAATTGCAGAAGCAAATCCGGATA
TTGTTTTTGTCGATATCATGATGCCTCGTTTAGATGGTTATCAAACGTGTGCTTTGATAAAAAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGTTAAACGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37