Detailed information NTG0087151

Bioinformatically predicted

Overview

• Name: degU
• Type: Regulator
• Locus tag: BsBEST3145_RS18895
• Genome accession: NZ_AP024625
• Coordinates: 3610684..3611373 (-)
• Length: 229 a.a.
• NCBI ID: WP_003219701.1
• Uniprot ID: G4P1D5
• Organism: Bacillus subtilis strain BEST3109
• Function: activation of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3605684..3616373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BsBEST3145_RS18860 (BsBEST3109_36310)	flgN	3605864..3606346 (-)	483	WP_003227999.1	flagellar protein FlgN	-
BsBEST3145_RS18865 (BsBEST3109_36320)	flgM	3606362..3606628 (-)	267	WP_003227997.1	flagellar biosynthesis anti-sigma factor FlgM	-
BsBEST3145_RS18870 (BsBEST3109_36330)	yvyF	3606709..3607128 (-)	420	WP_003227995.1	TIGR03826 family flagellar region protein	-
BsBEST3145_RS18875 (BsBEST3109_36340)	comFC	3607202..3607924 (-)	723	WP_003227991.1	comF operon protein ComFC	Machinery gene
BsBEST3145_RS18880 (BsBEST3109_36350)	comFB	3607888..3608184 (-)	297	WP_003227989.1	late competence protein ComFB	-
BsBEST3145_RS18885 (BsBEST3109_36360)	comFA	3608244..3609635 (-)	1392	WP_003243962.1	ATP-dependent helicase ComFA	Machinery gene
BsBEST3145_RS18890 (BsBEST3109_36370)	fakBA	3609741..3610586 (-)	846	WP_003244125.1	DegV family protein	-
BsBEST3145_RS18895 (BsBEST3109_36380)	degU	3610684..3611373 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
BsBEST3145_RS18900 (BsBEST3109_36390)	degS	3611456..3612613 (-)	1158	WP_003227983.1	two-component sensor histidine kinase DegS	Regulator
BsBEST3145_RS18905 (BsBEST3109_36400)	yvyE	3612830..3613483 (+)	654	WP_003227979.1	YigZ family protein	-
BsBEST3145_RS18910 (BsBEST3109_36410)	tagV	3613483..3614658 (+)	1176	WP_003244117.1	polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV	-
BsBEST3145_RS18915 (BsBEST3109_36420)	tagO	3614731..3615807 (-)	1077	WP_003227975.1	MraY family glycosyltransferase	-

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25866.57 Da
• Isoelectric Point: 5.9446

>NTDB_id=87151 BsBEST3145_RS18895 WP_003219701.1 3610684..3611373(-) (degU) [Bacillus subtilis strain BEST3109]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide

• Length: 690 bp

>NTDB_id=87151 BsBEST3145_RS18895 WP_003219701.1 3610684..3611373(-) (degU) [Bacillus subtilis strain BEST3109]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (165-220)

• Response regulator receiver domain (Response_reg) (6-118)

3D structure

• AlphaFold DB: G4P1D5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degU	Bacillus subtilis subsp. subtilis str. 168	100	100	1