Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RBI11_RS05280 Genome accession   NZ_CP133052
Coordinates   1081145..1081555 (-) Length   136 a.a.
NCBI ID   WP_057092817.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1014     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1076145..1086555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS05250 (RBI11_05270) - 1076231..1076500 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RBI11_RS05255 (RBI11_05275) rapZ 1076497..1077348 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RBI11_RS05260 (RBI11_05280) panC 1077371..1078219 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RBI11_RS05265 (RBI11_05285) panB 1078223..1079032 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RBI11_RS05270 (RBI11_05290) folK 1079078..1079560 (-) 483 WP_000219222.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RBI11_RS05275 (RBI11_05295) pcnB 1079557..1081020 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  RBI11_RS05280 (RBI11_05300) comEA 1081145..1081555 (-) 411 WP_057092817.1 ComEA family DNA-binding protein Machinery gene
  RBI11_RS05285 (RBI11_05305) mazG 1081524..1082330 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  RBI11_RS05290 (RBI11_05310) - 1082442..1083215 (+) 774 WP_057092818.1 SDR family oxidoreductase -
  RBI11_RS05295 (RBI11_05315) - 1083260..1085566 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15656.94 Da        Isoelectric Point: 10.3495

>NTDB_id=871484 RBI11_RS05280 WP_057092817.1 1081145..1081555(-) (comEA) [Acinetobacter baumannii strain A1014]
MQYSMRFWKNKYFLLIMLCLGVISPSVCAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNSSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=871484 RBI11_RS05280 WP_057092817.1 1081145..1081555(-) (comEA) [Acinetobacter baumannii strain A1014]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATAGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

99.265

100

0.993
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baylyi ADP1

44.275

96.324

0.426