NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	RBI10_RS16125	Genome accession	NZ_CP133047
Coordinates	3397906..3398766 (+)	Length	286 a.a.
NCBI ID	WP_032070754.1	Uniprot ID	A0AAE9M8Y4
Organism	Acinetobacter pittii strain A1269
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3392906..3403766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBI10_RS16105 (RBI10_16140)	secG	3393513..3393842 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
RBI10_RS16110 (RBI10_16145)	tpiA	3393855..3394649 (-)	795	WP_032063691.1	triose-phosphate isomerase	-
RBI10_RS16115 (RBI10_16150)	pilB	3394941..3396653 (+)	1713	WP_069120450.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RBI10_RS16120 (RBI10_16155)	pilC	3396680..3397906 (+)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
RBI10_RS16125 (RBI10_16160)	pilD	3397906..3398766 (+)	861	WP_032070754.1	A24 family peptidase	Machinery gene
RBI10_RS16130 (RBI10_16165)	coaE	3398768..3399364 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
RBI10_RS16135 (RBI10_16170)	-	3399361..3400275 (-)	915	WP_032063689.1	DMT family transporter	-
RBI10_RS16140 (RBI10_16175)	rlmB	3400311..3401060 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RBI10_RS16145 (RBI10_16180)	-	3401163..3401489 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
RBI10_RS16150 (RBI10_16185)	-	3401566..3402876 (-)	1311	WP_032063688.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32128.61 Da Isoelectric Point: 6.4261

                                >NTDB_id=871468 RBI10_RS16125 WP_032070754.1 3397906..3398766(+) (pilD) [Acinetobacter pittii strain A1269]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQILLNPELPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=871468 RBI10_RS16125 WP_032070754.1 3397906..3398766(+) (pilD) [Acinetobacter pittii strain A1269]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATATTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG

ATATTTAATCGGTTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0871468