Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RBI10_RS14880 Genome accession   NZ_CP133047
Coordinates   3120304..3120708 (-) Length   134 a.a.
NCBI ID   WP_032057521.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1269     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3115304..3125708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS14850 (RBI10_14885) - 3115388..3115657 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RBI10_RS14855 (RBI10_14890) rapZ 3115654..3116505 (-) 852 WP_005066272.1 RNase adapter RapZ -
  RBI10_RS14860 (RBI10_14895) panC 3116529..3117377 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  RBI10_RS14865 (RBI10_14900) panB 3117381..3118190 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RBI10_RS14870 (RBI10_14905) folK 3118236..3118718 (-) 483 WP_069120349.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RBI10_RS14875 (RBI10_14910) pcnB 3118715..3120178 (-) 1464 WP_032057519.1 polynucleotide adenylyltransferase PcnB -
  RBI10_RS14880 (RBI10_14915) comEA 3120304..3120708 (-) 405 WP_032057521.1 ComEA family DNA-binding protein Machinery gene
  RBI10_RS14885 (RBI10_14920) mazG 3120677..3121483 (-) 807 WP_032057523.1 nucleoside triphosphate pyrophosphohydrolase -
  RBI10_RS14890 (RBI10_14925) - 3121596..3122369 (+) 774 WP_014208394.1 SDR family oxidoreductase -
  RBI10_RS14895 (RBI10_14930) relA 3122416..3124722 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15518.74 Da        Isoelectric Point: 10.5869

>NTDB_id=871460 RBI10_RS14880 WP_032057521.1 3120304..3120708(-) (comEA) [Acinetobacter pittii strain A1269]
MQLSMNLWKNKHNIFIVLFWSLISSTFIQAQSFDQNFKEWKTKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=871460 RBI10_RS14880 WP_032057521.1 3120304..3120708(-) (comEA) [Acinetobacter pittii strain A1269]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TATTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGACTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCATTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396