Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RBI10_RS01650 Genome accession   NZ_CP133047
Coordinates   352665..353474 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain A1269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347665..358474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS01615 (RBI10_01620) - 348223..348378 (-) 156 Protein_309 hypothetical protein -
  RBI10_RS01620 (RBI10_01625) rpoZ 348417..348695 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  RBI10_RS01625 (RBI10_01630) gmk 348768..349397 (-) 630 WP_002116973.1 guanylate kinase -
  RBI10_RS01630 (RBI10_01635) ispH 349520..350470 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI10_RS01635 (RBI10_01640) fimU 350640..351113 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI10_RS01640 (RBI10_01645) pilV 351107..351667 (+) 561 WP_081037637.1 type IV pilus modification protein PilV Machinery gene
  RBI10_RS01645 (RBI10_01650) pilW 351667..352668 (+) 1002 WP_057061737.1 PilW family protein Machinery gene
  RBI10_RS01650 (RBI10_01655) pilX 352665..353474 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBI10_RS01655 (RBI10_01660) pilY1 353486..357340 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene
  RBI10_RS01660 (RBI10_01665) pilY2 357351..357833 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  RBI10_RS01665 (RBI10_01670) pilE 357830..358255 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=871440 RBI10_RS01650 WP_017481716.1 352665..353474(+) (pilX) [Acinetobacter pittii strain A1269]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=871440 RBI10_RS01650 WP_017481716.1 352665..353474(+) (pilX) [Acinetobacter pittii strain A1269]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907