Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RBI10_RS01635 Genome accession   NZ_CP133047
Coordinates   350640..351113 (+) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345640..356113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS01610 (RBI10_01615) spoT 346102..348207 (-) 2106 WP_069120191.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RBI10_RS01615 (RBI10_01620) - 348223..348378 (-) 156 Protein_309 hypothetical protein -
  RBI10_RS01620 (RBI10_01625) rpoZ 348417..348695 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  RBI10_RS01625 (RBI10_01630) gmk 348768..349397 (-) 630 WP_002116973.1 guanylate kinase -
  RBI10_RS01630 (RBI10_01635) ispH 349520..350470 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI10_RS01635 (RBI10_01640) fimU 350640..351113 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI10_RS01640 (RBI10_01645) pilV 351107..351667 (+) 561 WP_081037637.1 type IV pilus modification protein PilV Machinery gene
  RBI10_RS01645 (RBI10_01650) pilW 351667..352668 (+) 1002 WP_057061737.1 PilW family protein Machinery gene
  RBI10_RS01650 (RBI10_01655) pilX 352665..353474 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=871437 RBI10_RS01635 WP_005067119.1 350640..351113(+) (fimU) [Acinetobacter pittii strain A1269]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=871437 RBI10_RS01635 WP_005067119.1 350640..351113(+) (fimU) [Acinetobacter pittii strain A1269]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGTAAGCGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAACATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885