Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RBI10_RS01665 Genome accession   NZ_CP133047
Coordinates   357830..358255 (+) Length   141 a.a.
NCBI ID   WP_002117055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352830..363255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS01655 (RBI10_01660) pilY1 353486..357340 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene
  RBI10_RS01660 (RBI10_01665) pilY2 357351..357833 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  RBI10_RS01665 (RBI10_01670) pilE 357830..358255 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  RBI10_RS01670 (RBI10_01675) rpsP 358403..358654 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RBI10_RS01675 (RBI10_01680) rimM 358674..359222 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  RBI10_RS01680 (RBI10_01685) trmD 359265..360020 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RBI10_RS01685 (RBI10_01690) rplS 360240..360608 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  RBI10_RS01690 (RBI10_01695) lip 360660..361601 (-) 942 WP_080777126.1 triacylglycerol lipase -
  RBI10_RS01695 (RBI10_01700) - 361717..362748 (-) 1032 WP_032063173.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15172.33 Da        Isoelectric Point: 7.1292

>NTDB_id=871443 RBI10_RS01665 WP_002117055.1 357830..358255(+) (pilE) [Acinetobacter pittii strain A1269]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKIVHNRYPSNATITSVYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=871443 RBI10_RS01665 WP_002117055.1 357830..358255(+) (pilE) [Acinetobacter pittii strain A1269]
ATGAAGAATGGTTTTACTTTAATAGAACTCATGATTGTAGTCGCAATAATTGCAATTTTAGCGGCTATAGCTACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAATAGTTCACAATCGCTATCCATCGAATGCAACGATTACATCGGTTTATGGTTCTAGTGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTCGCTAGCATAACTGATTCAAGTTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518