Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RBI10_RS01520 Genome accession   NZ_CP133047
Coordinates   325351..325878 (+) Length   175 a.a.
NCBI ID   WP_069120199.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320351..330878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS01505 (RBI10_01510) comM 322892..323950 (+) 1059 WP_069120207.1 pilus assembly protein PilM Machinery gene
  RBI10_RS01510 (RBI10_01515) pilN 323950..324591 (+) 642 WP_069120205.1 PilN domain-containing protein Machinery gene
  RBI10_RS01515 (RBI10_01520) pilO 324588..325340 (+) 753 WP_069120201.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBI10_RS01520 (RBI10_01525) pilP 325351..325878 (+) 528 WP_069120199.1 pilus assembly protein PilP Machinery gene
  RBI10_RS01525 (RBI10_01530) pilQ 325941..328067 (+) 2127 WP_069120196.1 type IV pilus secretin PilQ Machinery gene
  RBI10_RS01530 (RBI10_01535) aroK 328079..328648 (+) 570 WP_002116987.1 shikimate kinase AroK -
  RBI10_RS01535 (RBI10_01540) aroB 328677..329759 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -
  RBI10_RS01540 (RBI10_01545) - 329776..330645 (+) 870 WP_032057253.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19323.32 Da        Isoelectric Point: 9.0286

>NTDB_id=871434 RBI10_RS01520 WP_069120199.1 325351..325878(+) (pilP) [Acinetobacter pittii strain A1269]
MKFKQFSHSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=871434 RBI10_RS01520 WP_069120199.1 325351..325878(+) (pilP) [Acinetobacter pittii strain A1269]
ATGAAATTTAAACAATTTTCTCATTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCTGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709