Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RBI10_RS01510 Genome accession   NZ_CP133047
Coordinates   323950..324591 (+) Length   213 a.a.
NCBI ID   WP_069120205.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 318950..329591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS01495 (RBI10_01500) rrmA 319253..320077 (+) 825 WP_081318661.1 putative RNA methyltransferase -
  RBI10_RS01500 (RBI10_01505) ponA 320169..322730 (-) 2562 WP_069120210.1 penicillin-binding protein PBP1a -
  RBI10_RS01505 (RBI10_01510) comM 322892..323950 (+) 1059 WP_069120207.1 pilus assembly protein PilM Machinery gene
  RBI10_RS01510 (RBI10_01515) pilN 323950..324591 (+) 642 WP_069120205.1 PilN domain-containing protein Machinery gene
  RBI10_RS01515 (RBI10_01520) pilO 324588..325340 (+) 753 WP_069120201.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBI10_RS01520 (RBI10_01525) pilP 325351..325878 (+) 528 WP_069120199.1 pilus assembly protein PilP Machinery gene
  RBI10_RS01525 (RBI10_01530) pilQ 325941..328067 (+) 2127 WP_069120196.1 type IV pilus secretin PilQ Machinery gene
  RBI10_RS01530 (RBI10_01535) aroK 328079..328648 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23873.36 Da        Isoelectric Point: 6.4518

>NTDB_id=871432 RBI10_RS01510 WP_069120205.1 323950..324591(+) (pilN) [Acinetobacter pittii strain A1269]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRSGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTPLGTDKGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=871432 RBI10_RS01510 WP_069120205.1 323950..324591(+) (pilN) [Acinetobacter pittii strain A1269]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAACGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAAGCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACCACAACAGATGATACCGCCAATACGCCTTTAGGTACGGATAAGGGGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.22

96.244

0.685