Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA   Type   Machinery gene
Locus tag   BsBEST3145_RS13625 Genome accession   NZ_AP024625
Coordinates   2606607..2607224 (-) Length   205 a.a.
NCBI ID   WP_004398514.1    Uniprot ID   A0AAE2SLR2
Organism   Bacillus subtilis strain BEST3109     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2601607..2612224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS13595 (BsBEST3109_26080) rpsT 2601909..2602175 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  BsBEST3145_RS13600 (BsBEST3109_26090) holA 2602190..2603233 (-) 1044 WP_003229987.1 DNA polymerase III subunit delta -
  BsBEST3145_RS13605 - 2603273..2603422 (-) 150 WP_003229985.1 hypothetical protein -
  BsBEST3145_RS13610 (BsBEST3109_26100) yqzM 2603463..2603597 (+) 135 WP_003229983.1 YqzM family protein -
  BsBEST3145_RS13615 comEC 2603637..2605967 (-) 2331 WP_009967776.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BsBEST3145_RS13620 (BsBEST3109_26130) comEB 2605971..2606540 (-) 570 WP_003229978.1 ComE operon protein 2 -
  BsBEST3145_RS13625 (BsBEST3109_26140) comEA 2606607..2607224 (-) 618 WP_004398514.1 competence protein ComEA Machinery gene
  BsBEST3145_RS13630 (BsBEST3109_26150) comER 2607308..2608129 (+) 822 WP_004398597.1 late competence protein ComER -
  BsBEST3145_RS13635 (BsBEST3109_26160) yqeM 2608195..2608938 (-) 744 WP_003229973.1 class I SAM-dependent methyltransferase -
  BsBEST3145_RS13640 (BsBEST3109_26170) rsfS 2608935..2609291 (-) 357 WP_003229971.1 ribosome silencing factor -
  BsBEST3145_RS13645 (BsBEST3109_26180) yqeK 2609309..2609869 (-) 561 WP_004399059.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BsBEST3145_RS13650 (BsBEST3109_26190) nadD 2609859..2610428 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  BsBEST3145_RS13655 (BsBEST3109_26200) yhbY 2610440..2610730 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  BsBEST3145_RS13660 (BsBEST3109_26210) aroE 2610724..2611566 (-) 843 WP_003229967.1 shikimate dehydrogenase -

Sequence


Protein


Download         Length: 205 a.a.        Molecular weight: 21769.45 Da        Isoelectric Point: 4.7220

>NTDB_id=87132 BsBEST3145_RS13625 WP_004398514.1 2606607..2607224(-) (comEA) [Bacillus subtilis strain BEST3109]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=87132 BsBEST3145_RS13625 WP_004398514.1 2606607..2607224(-) (comEA) [Bacillus subtilis strain BEST3109]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAGGAAAACGGTCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains


Predicted by InterproScan.

(142-203)

(63-118)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

100

100

1

  comEA Staphylococcus aureus MW2

37.273

100

0.4

  comEA Staphylococcus aureus N315

36.364

100

0.39


Multiple sequence alignment