Detailed information NTG0871283

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: SHJJP9001_RS11560
• Genome accession: NZ_CP132999
• Coordinates: 2424073..2424582 (-)
• Length: 169 a.a.
• NCBI ID: WP_001831333.1
• Uniprot ID: A0A2G7I1N0
• Organism: Staphylococcus epidermidis strain SEA37
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2419073..2429582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHJJP9001_RS11515 (SHJJP9001_002301)	-	2419111..2419734 (+)	624	WP_002456828.1	NDxxF motif lipoprotein	-
SHJJP9001_RS11520 (SHJJP9001_002302)	-	2419954..2420331 (+)	378	WP_002455905.1	hypothetical protein	-
SHJJP9001_RS11525 (SHJJP9001_002303)	-	2420863..2421453 (-)	591	WP_002455906.1	histidine phosphatase family protein	-
SHJJP9001_RS11530 (SHJJP9001_002304)	-	2421474..2422106 (-)	633	WP_001830914.1	LysE family translocator	-
SHJJP9001_RS11535 (SHJJP9001_002305)	-	2422269..2422358 (+)	90	Protein_2222	hypothetical protein	-
SHJJP9001_RS11540 (SHJJP9001_002306)	-	2422580..2422834 (-)	255	WP_001832461.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
SHJJP9001_RS11545 (SHJJP9001_002307)	-	2423056..2423316 (+)	261	WP_001830921.1	hypothetical protein	-
SHJJP9001_RS11550 (SHJJP9001_002308)	-	2423430..2423593 (+)	164	Protein_2225	XRE family transcriptional regulator	-
SHJJP9001_RS11555 (SHJJP9001_002309)	rpsR	2423786..2424028 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
SHJJP9001_RS11560 (SHJJP9001_002310)	ssbA	2424073..2424582 (-)	510	WP_001831333.1	single-stranded DNA-binding protein	Machinery gene
SHJJP9001_RS11565 (SHJJP9001_002311)	rpsF	2424605..2424901 (-)	297	WP_001831345.1	30S ribosomal protein S6	-
SHJJP9001_RS11570 (SHJJP9001_002312)	-	2425286..2426095 (+)	810	WP_001831342.1	GH25 family lysozyme	-
SHJJP9001_RS11575 (SHJJP9001_002313)	-	2426169..2426360 (+)	192	WP_001831355.1	hypothetical protein	-
SHJJP9001_RS11580 (SHJJP9001_002314)	ychF	2426593..2427690 (-)	1098	WP_001831336.1	redox-regulated ATPase YchF	-
SHJJP9001_RS11585 (SHJJP9001_002315)	-	2427702..2427905 (-)	204	WP_001831361.1	DUF951 domain-containing protein	-
SHJJP9001_RS11590 (SHJJP9001_002316)	-	2427926..2428801 (-)	876	WP_002468622.1	mechanosensitive ion channel family protein	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18680.20 Da
• Isoelectric Point: 4.9056

>NTDB_id=871283 SHJJP9001_RS11560 WP_001831333.1 2424073..2424582(-) (ssbA) [Staphylococcus epidermidis strain SEA37]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=871283 SHJJP9001_RS11560 WP_001831333.1 2424073..2424582(-) (ssbA) [Staphylococcus epidermidis strain SEA37]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A2G7I1N0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	64.607	100	0.68
ssb	Latilactobacillus sakei subsp. sakei 23K	55.172	100	0.568
ssbB	Bacillus subtilis subsp. subtilis str. 168	60.377	62.722	0.379