Detailed information NTG0087126

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ70_RS16170
• Genome accession: NZ_AP027537
• Coordinates: 3302464..3303489 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-46
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3297464..3308489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ70_RS16140 (VEE30_30830)	zapB	3297548..3297793 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AABJ70_RS16145 (VEE30_30840)	rraA	3297878..3298363 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ70_RS16150 (VEE30_30850)	menA	3298456..3299382 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ70_RS16155 (VEE30_30860)	hslU	3299449..3300780 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ70_RS16160 (VEE30_30870)	hslV	3300790..3301320 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ70_RS16165 (VEE30_30880)	ftsN	3301413..3302372 (-)	960	WP_000068828.1	cell division protein FtsN	-
AABJ70_RS16170 (VEE30_30890)	cytR	3302464..3303489 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ70_RS16175 (VEE30_30900)	priA	3303645..3305843 (-)	2199	WP_130563006.1	primosomal protein N'	Machinery gene
AABJ70_RS16180 (VEE30_30910)	rpmE	3306046..3306258 (+)	213	WP_000710769.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=87126 AABJ70_RS16170 WP_000644904.1 3302464..3303489(-) (cytR) [Escherichia coli strain LR-46]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=87126 AABJ70_RS16170 WP_000644904.1 3302464..3303489(-) (cytR) [Escherichia coli strain LR-46]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628