Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BsBEST3145_RS13120 Genome accession   NZ_AP024625
Coordinates   2518747..2519082 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain BEST3109     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2513747..2524082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS13100 (BsBEST3109_25090) gcvT 2514339..2515427 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  BsBEST3145_RS13105 (BsBEST3109_25100) hepAA 2515869..2517542 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  BsBEST3145_RS13110 (BsBEST3109_25110) yqhG 2517563..2518357 (+) 795 WP_003230200.1 YqhG family protein -
  BsBEST3145_RS13115 (BsBEST3109_25120) sinI 2518540..2518713 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  BsBEST3145_RS13120 (BsBEST3109_25130) sinR 2518747..2519082 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BsBEST3145_RS13125 (BsBEST3109_25140) tasA 2519175..2519960 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  BsBEST3145_RS13130 (BsBEST3109_25150) sipW 2520024..2520596 (-) 573 WP_003246088.1 signal peptidase I SipW -
  BsBEST3145_RS13135 (BsBEST3109_25160) tapA 2520580..2521341 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  BsBEST3145_RS13140 (BsBEST3109_25170) yqzG 2521613..2521939 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  BsBEST3145_RS13145 (BsBEST3109_25180) spoIITA 2521981..2522160 (-) 180 WP_003230176.1 YqzE family protein -
  BsBEST3145_RS13150 (BsBEST3109_25190) comGG 2522231..2522605 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  BsBEST3145_RS13155 (BsBEST3109_25200) comGF 2522606..2522989 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  BsBEST3145_RS13160 (BsBEST3109_25210) comGE 2523015..2523362 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  BsBEST3145_RS13165 (BsBEST3109_25220) comGD 2523346..2523777 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  BsBEST3145_RS13170 (BsBEST3109_25230) comGC 2523767..2524063 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=87121 BsBEST3145_RS13120 WP_003226345.1 2518747..2519082(+) (sinR) [Bacillus subtilis strain BEST3109]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=87121 BsBEST3145_RS13120 WP_003226345.1 2518747..2519082(+) (sinR) [Bacillus subtilis strain BEST3109]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment