Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABJ70_RS13045 Genome accession   NZ_AP027537
Coordinates   2634731..2635363 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain LR-46     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2629731..2640363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ70_RS13020 (VEE30_24950) yheS 2629900..2631813 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  AABJ70_RS13025 (VEE30_24960) yheT 2631813..2632835 (+) 1023 WP_000057357.1 hydrolase -
  AABJ70_RS13030 (VEE30_24970) yheU 2632829..2633047 (+) 219 WP_000907085.1 YheU family protein -
  AABJ70_RS13035 (VEE30_24980) prkB 2633101..2633970 (+) 870 WP_001274680.1 phosphoribulokinase -
  AABJ70_RS13040 (VEE30_24990) yhfA 2634025..2634429 (-) 405 WP_001148908.1 OsmC family protein -
  AABJ70_RS13045 (VEE30_25000) crp 2634731..2635363 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABJ70_RS13050 (VEE30_25010) yhfK 2635414..2637504 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABJ70_RS13055 (VEE30_25020) argD 2637571..2638791 (-) 1221 WP_000963787.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABJ70_RS13060 (VEE30_25030) pabA 2638877..2639440 (-) 564 WP_096261451.1 aminodeoxychorismate synthase component 2 -
  AABJ70_RS13065 (VEE30_25040) fic 2639472..2640074 (-) 603 WP_001280650.1 putative adenosine monophosphate-protein transferase Fic -
  AABJ70_RS13070 (VEE30_25050) yhfG 2640064..2640231 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=87108 AABJ70_RS13045 WP_000242755.1 2634731..2635363(+) (crp) [Escherichia coli strain LR-46]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=87108 AABJ70_RS13045 WP_000242755.1 2634731..2635363(+) (crp) [Escherichia coli strain LR-46]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467