Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RBB55_RS16285 Genome accession   NZ_CP132915
Coordinates   3381372..3382190 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376372..3387190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS16270 (RBB55_16295) pilE 3376589..3377014 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  RBB55_RS16275 (RBB55_16300) pilY2 3377011..3377493 (-) 483 WP_001046418.1 type IV pilin protein Machinery gene
  RBB55_RS16280 (RBB55_16305) pilY1 3377506..3381360 (-) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene
  RBB55_RS16285 (RBB55_16310) pilX 3381372..3382190 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBB55_RS16290 (RBB55_16315) pilW 3382187..3383188 (-) 1002 WP_000079193.1 PilW family protein Machinery gene
  RBB55_RS16295 (RBB55_16320) pilV 3383189..3383749 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RBB55_RS16300 (RBB55_16325) fimU 3383743..3384216 (-) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBB55_RS16305 (RBB55_16330) ispH 3384386..3385336 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBB55_RS16310 (RBB55_16335) gmk 3385459..3386088 (+) 630 WP_000015939.1 guanylate kinase -
  RBB55_RS16315 (RBB55_16340) rpoZ 3386161..3386439 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RBB55_RS16320 (RBB55_16345) - 3386478..3386608 (+) 131 Protein_3180 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=870753 RBB55_RS16285 WP_000149374.1 3381372..3382190(-) (pilX) [Acinetobacter baumannii strain A207]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=870753 RBB55_RS16285 WP_000149374.1 3381372..3382190(-) (pilX) [Acinetobacter baumannii strain A207]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCCGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993