Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RBB55_RS16300 Genome accession   NZ_CP132915
Coordinates   3383743..3384216 (-) Length   157 a.a.
NCBI ID   WP_001214064.1    Uniprot ID   A0A0J8UYN3
Organism   Acinetobacter baumannii strain A207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3378743..3389216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS16285 (RBB55_16310) pilX 3381372..3382190 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBB55_RS16290 (RBB55_16315) pilW 3382187..3383188 (-) 1002 WP_000079193.1 PilW family protein Machinery gene
  RBB55_RS16295 (RBB55_16320) pilV 3383189..3383749 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RBB55_RS16300 (RBB55_16325) fimU 3383743..3384216 (-) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBB55_RS16305 (RBB55_16330) ispH 3384386..3385336 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBB55_RS16310 (RBB55_16335) gmk 3385459..3386088 (+) 630 WP_000015939.1 guanylate kinase -
  RBB55_RS16315 (RBB55_16340) rpoZ 3386161..3386439 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RBB55_RS16320 (RBB55_16345) - 3386478..3386608 (+) 131 Protein_3180 hypothetical protein -
  RBB55_RS16325 (RBB55_16350) - 3386648..3388753 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16850.43 Da        Isoelectric Point: 8.5355

>NTDB_id=870756 RBB55_RS16300 WP_001214064.1 3383743..3384216(-) (fimU) [Acinetobacter baumannii strain A207]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=870756 RBB55_RS16300 WP_001214064.1 3383743..3384216(-) (fimU) [Acinetobacter baumannii strain A207]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994