Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RBB55_RS16275 Genome accession   NZ_CP132915
Coordinates   3377011..3377493 (-) Length   160 a.a.
NCBI ID   WP_001046418.1    Uniprot ID   A0A0J8UYN7
Organism   Acinetobacter baumannii strain A207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3372011..3382493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS16240 (RBB55_16265) - 3372122..3373153 (+) 1032 WP_002125597.1 lipase secretion chaperone -
  RBB55_RS16245 (RBB55_16270) - 3373268..3374209 (+) 942 WP_085943440.1 triacylglycerol lipase -
  RBB55_RS16250 (RBB55_16275) rplS 3374261..3374629 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  RBB55_RS16255 (RBB55_16280) trmD 3374837..3375577 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RBB55_RS16260 (RBB55_16285) rimM 3375623..3376171 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  RBB55_RS16265 (RBB55_16290) rpsP 3376191..3376442 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  RBB55_RS16270 (RBB55_16295) pilE 3376589..3377014 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  RBB55_RS16275 (RBB55_16300) pilY2 3377011..3377493 (-) 483 WP_001046418.1 type IV pilin protein Machinery gene
  RBB55_RS16280 (RBB55_16305) pilY1 3377506..3381360 (-) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene
  RBB55_RS16285 (RBB55_16310) pilX 3381372..3382190 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=870751 RBB55_RS16275 WP_001046418.1 3377011..3377493(-) (pilY2) [Acinetobacter baumannii strain A207]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=870751 RBB55_RS16275 WP_001046418.1 3377011..3377493(-) (pilY2) [Acinetobacter baumannii strain A207]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95.625

100

0.956
  comE Acinetobacter baylyi ADP1

41.279

100

0.444