Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   WHU05_RS19860 Genome accession   NZ_CP148363
Coordinates   4031153..4031785 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain Z1323HEC0355     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4026153..4036785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU05_RS19835 (WHU05_19815) yheS 4026322..4028235 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  WHU05_RS19840 (WHU05_19820) yheT 4028235..4029257 (+) 1023 WP_000057389.1 hydrolase -
  WHU05_RS19845 (WHU05_19825) yheU 4029251..4029469 (+) 219 WP_000907085.1 YheU family protein -
  WHU05_RS19850 (WHU05_19830) prkB 4029523..4030392 (+) 870 WP_001274684.1 phosphoribulokinase -
  WHU05_RS19855 (WHU05_19835) yhfA 4030447..4030851 (-) 405 WP_001148908.1 OsmC family protein -
  WHU05_RS19860 (WHU05_19840) crp 4031153..4031785 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  WHU05_RS19865 (WHU05_19845) yhfK 4031836..4033926 (+) 2091 WP_001356893.1 YccS/YhfK family putative transporter -
  WHU05_RS19870 (WHU05_19850) argD 4034004..4035224 (-) 1221 WP_021560063.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  WHU05_RS19875 (WHU05_19855) pabA 4035310..4035873 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  WHU05_RS19880 (WHU05_19860) fic 4035905..4036507 (-) 603 WP_001280638.1 putative adenosine monophosphate-protein transferase Fic -
  WHU05_RS19885 (WHU05_19865) yhfG 4036497..4036664 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=870745 WHU05_RS19860 WP_000242755.1 4031153..4031785(+) (crp) [Escherichia coli strain Z1323HEC0355]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=870745 WHU05_RS19860 WP_000242755.1 4031153..4031785(+) (crp) [Escherichia coli strain Z1323HEC0355]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467