Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WHU05_RS19750 Genome accession   NZ_CP148363
Coordinates   4013788..4014255 (+) Length   155 a.a.
NCBI ID   WP_000340163.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323HEC0355     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4008788..4019255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU05_RS19705 (WHU05_19685) rplP 4008898..4009308 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  WHU05_RS19710 (WHU05_19690) rpsC 4009321..4010022 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  WHU05_RS19715 (WHU05_19695) rplV 4010040..4010372 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  WHU05_RS19720 (WHU05_19700) rpsS 4010387..4010665 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  WHU05_RS19725 (WHU05_19705) rplB 4010682..4011503 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  WHU05_RS19730 (WHU05_19710) rplW 4011521..4011823 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  WHU05_RS19735 (WHU05_19715) rplD 4011820..4012425 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  WHU05_RS19740 (WHU05_19720) rplC 4012436..4013065 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  WHU05_RS19745 (WHU05_19725) rpsJ 4013098..4013409 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  WHU05_RS19750 (WHU05_19730) pilD 4013788..4014255 (+) 468 WP_000340163.1 A24 family peptidase Machinery gene
  WHU05_RS19755 (WHU05_19735) bfr 4014252..4014728 (-) 477 WP_000675515.1 bacterioferritin -
  WHU05_RS19760 (WHU05_19740) bfd 4014801..4014995 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  WHU05_RS19765 (WHU05_19745) tuf 4015178..4016362 (-) 1185 WP_000031783.1 elongation factor Tu -
  WHU05_RS19770 (WHU05_19750) fusA 4016433..4018547 (-) 2115 WP_000124700.1 elongation factor G -
  WHU05_RS19775 (WHU05_19755) rpsG 4018644..4019114 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17079.25 Da        Isoelectric Point: 8.1216

>NTDB_id=870744 WHU05_RS19750 WP_000340163.1 4013788..4014255(+) (pilD) [Escherichia coli strain Z1323HEC0355]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCYPDGLADALWGAIIGYSTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTLLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=870744 WHU05_RS19750 WP_000340163.1 4013788..4014255(+) (pilD) [Escherichia coli strain Z1323HEC0355]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTACCAGGTTTGTTATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACAGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTATTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCCTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CATTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTTGGCTGGGATAGTTTGCTGGCCGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368