Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RBB55_RS02900 Genome accession   NZ_CP132915
Coordinates   619081..619491 (+) Length   136 a.a.
NCBI ID   WP_114159487.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A207     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614081..624491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS02885 (RBB55_02885) - 615070..617376 (+) 2307 WP_004738178.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RBB55_RS02890 (RBB55_02890) - 617421..618194 (-) 774 WP_002125966.1 SDR family oxidoreductase -
  RBB55_RS02895 (RBB55_02895) mazG 618306..619112 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  RBB55_RS02900 (RBB55_02900) comEA 619081..619491 (+) 411 WP_114159487.1 ComEA family DNA-binding protein Machinery gene
  RBB55_RS02905 (RBB55_02905) pcnB 619616..621079 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  RBB55_RS02910 (RBB55_02910) folK 621076..621558 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RBB55_RS02915 (RBB55_02915) panB 621604..622413 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RBB55_RS02920 (RBB55_02920) panC 622417..623265 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RBB55_RS02925 (RBB55_02925) rapZ 623288..624139 (+) 852 WP_000821671.1 RNase adapter RapZ -
  RBB55_RS02930 (RBB55_02930) - 624136..624405 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15733.07 Da        Isoelectric Point: 10.4475

>NTDB_id=870732 RBB55_RS02900 WP_114159487.1 619081..619491(+) (comEA) [Acinetobacter baumannii strain A207]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=870732 RBB55_RS02900 WP_114159487.1 619081..619491(+) (comEA) [Acinetobacter baumannii strain A207]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412