Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RA292_RS17580 Genome accession   NZ_CP132912
Coordinates   3413739..3414428 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408739..3419428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS17545 flgN 3408919..3409401 (-) 483 WP_003227999.1 flagellar protein FlgN -
  RA292_RS17550 flgM 3409417..3409683 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  RA292_RS17555 yvyF 3409764..3410183 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RA292_RS17560 comFC 3410257..3410979 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  RA292_RS17565 comFB 3410943..3411239 (-) 297 WP_003227989.1 late competence protein ComFB -
  RA292_RS17570 comFA 3411299..3412690 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  RA292_RS17575 fakBA 3412796..3413641 (-) 846 WP_003244125.1 DegV family protein -
  RA292_RS17580 degU 3413739..3414428 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RA292_RS17585 degS 3414511..3415668 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RA292_RS17590 yvyE 3415885..3416538 (+) 654 WP_003227979.1 YigZ family protein -
  RA292_RS17595 tagV 3416538..3417713 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RA292_RS17600 tagO 3417786..3418862 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=870676 RA292_RS17580 WP_003219701.1 3413739..3414428(-) (degU) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=870676 RA292_RS17580 WP_003219701.1 3413739..3414428(-) (degU) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1