Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RA292_RS17560 Genome accession   NZ_CP132912
Coordinates   3410257..3410979 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405257..3415979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS17525 fliW 3405396..3405827 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  RA292_RS17530 yviE 3405848..3406423 (-) 576 WP_003243053.1 DUF6470 family protein -
  RA292_RS17535 flgL 3406470..3407366 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  RA292_RS17540 flgK 3407377..3408900 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  RA292_RS17545 flgN 3408919..3409401 (-) 483 WP_003227999.1 flagellar protein FlgN -
  RA292_RS17550 flgM 3409417..3409683 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  RA292_RS17555 yvyF 3409764..3410183 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RA292_RS17560 comFC 3410257..3410979 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  RA292_RS17565 comFB 3410943..3411239 (-) 297 WP_003227989.1 late competence protein ComFB -
  RA292_RS17570 comFA 3411299..3412690 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  RA292_RS17575 fakBA 3412796..3413641 (-) 846 WP_003244125.1 DegV family protein -
  RA292_RS17580 degU 3413739..3414428 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RA292_RS17585 degS 3414511..3415668 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=870674 RA292_RS17560 WP_003227991.1 3410257..3410979(-) (comFC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=870674 RA292_RS17560 WP_003227991.1 3410257..3410979(-) (comFC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1