Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RA292_RS11785 Genome accession   NZ_CP132912
Coordinates   2326160..2326495 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2321160..2331495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS11765 gcvT 2321752..2322840 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  RA292_RS11770 hepAA 2323282..2324955 (+) 1674 WP_003230203.1 DEAD/DEAH box helicase -
  RA292_RS11775 yqhG 2324976..2325770 (+) 795 WP_003230200.1 YqhG family protein -
  RA292_RS11780 sinI 2325953..2326126 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  RA292_RS11785 sinR 2326160..2326495 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  RA292_RS11790 tasA 2326588..2327373 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  RA292_RS11795 sipW 2327437..2328009 (-) 573 WP_003230181.1 signal peptidase I SipW -
  RA292_RS11800 tapA 2327993..2328754 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  RA292_RS11805 yqzG 2329026..2329352 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  RA292_RS11810 spoIITA 2329394..2329573 (-) 180 WP_003230176.1 YqzE family protein -
  RA292_RS11815 comGG 2329644..2330018 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  RA292_RS11820 comGF 2330019..2330402 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  RA292_RS11825 comGE 2330428..2330775 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  RA292_RS11830 comGD 2330759..2331190 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  RA292_RS11835 comGC 2331180..2331476 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=870649 RA292_RS11785 WP_003226345.1 2326160..2326495(+) (sinR) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=870649 RA292_RS11785 WP_003226345.1 2326160..2326495(+) (sinR) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1